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Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples

Colorectal cancer is a malignant tumor which harmed human beings' health. The aim of this study was to explore common biomarkers associated with colorectal carcinogenesis in paired cancer and noncancer samples. At first, fifty-nine pairs of colorectal cancer and noncancer samples from three gen...

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Detalles Bibliográficos
Autores principales: Zhang, Lihua, Yang, Yonglong, Cheng, Lin, Cheng, Yu, Zhou, Hong-Hao, Tan, Zhi-Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5830953/
https://www.ncbi.nlm.nih.gov/pubmed/29651323
http://dx.doi.org/10.1155/2018/3452739
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author Zhang, Lihua
Yang, Yonglong
Cheng, Lin
Cheng, Yu
Zhou, Hong-Hao
Tan, Zhi-Rong
author_facet Zhang, Lihua
Yang, Yonglong
Cheng, Lin
Cheng, Yu
Zhou, Hong-Hao
Tan, Zhi-Rong
author_sort Zhang, Lihua
collection PubMed
description Colorectal cancer is a malignant tumor which harmed human beings' health. The aim of this study was to explore common biomarkers associated with colorectal carcinogenesis in paired cancer and noncancer samples. At first, fifty-nine pairs of colorectal cancer and noncancer samples from three gene expression datasets were collected and analyzed. Then, 181 upregulation and 282 downregulation common differential expression genes (DEGs) were found. Next, functional annotation was performed in the DAVID database with the DEGs. Finally, real-time polymerase chain reaction (PCR) assay was conducted to verify the analyses in sixteen colorectal cancer and individual-matched adjacent mucosa samples. Real-time PCR showed that MCM2, RNASEH2A, and TOP2A were upregulated in colorectal cancer compared with adjacent mucosa samples (MCM2, P < 0.001; RNASEH2A, P < 0.001; TOP2A, P = 0.001). These suggested that 463 DEGs might contribute to colorectal carcinogenesis.
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spelling pubmed-58309532018-04-12 Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples Zhang, Lihua Yang, Yonglong Cheng, Lin Cheng, Yu Zhou, Hong-Hao Tan, Zhi-Rong Dis Markers Research Article Colorectal cancer is a malignant tumor which harmed human beings' health. The aim of this study was to explore common biomarkers associated with colorectal carcinogenesis in paired cancer and noncancer samples. At first, fifty-nine pairs of colorectal cancer and noncancer samples from three gene expression datasets were collected and analyzed. Then, 181 upregulation and 282 downregulation common differential expression genes (DEGs) were found. Next, functional annotation was performed in the DAVID database with the DEGs. Finally, real-time polymerase chain reaction (PCR) assay was conducted to verify the analyses in sixteen colorectal cancer and individual-matched adjacent mucosa samples. Real-time PCR showed that MCM2, RNASEH2A, and TOP2A were upregulated in colorectal cancer compared with adjacent mucosa samples (MCM2, P < 0.001; RNASEH2A, P < 0.001; TOP2A, P = 0.001). These suggested that 463 DEGs might contribute to colorectal carcinogenesis. Hindawi 2018-01-30 /pmc/articles/PMC5830953/ /pubmed/29651323 http://dx.doi.org/10.1155/2018/3452739 Text en Copyright © 2018 Lihua Zhang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhang, Lihua
Yang, Yonglong
Cheng, Lin
Cheng, Yu
Zhou, Hong-Hao
Tan, Zhi-Rong
Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
title Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
title_full Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
title_fullStr Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
title_full_unstemmed Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
title_short Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
title_sort identification of common genes refers to colorectal carcinogenesis with paired cancer and noncancer samples
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5830953/
https://www.ncbi.nlm.nih.gov/pubmed/29651323
http://dx.doi.org/10.1155/2018/3452739
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