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Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples
Colorectal cancer is a malignant tumor which harmed human beings' health. The aim of this study was to explore common biomarkers associated with colorectal carcinogenesis in paired cancer and noncancer samples. At first, fifty-nine pairs of colorectal cancer and noncancer samples from three gen...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5830953/ https://www.ncbi.nlm.nih.gov/pubmed/29651323 http://dx.doi.org/10.1155/2018/3452739 |
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author | Zhang, Lihua Yang, Yonglong Cheng, Lin Cheng, Yu Zhou, Hong-Hao Tan, Zhi-Rong |
author_facet | Zhang, Lihua Yang, Yonglong Cheng, Lin Cheng, Yu Zhou, Hong-Hao Tan, Zhi-Rong |
author_sort | Zhang, Lihua |
collection | PubMed |
description | Colorectal cancer is a malignant tumor which harmed human beings' health. The aim of this study was to explore common biomarkers associated with colorectal carcinogenesis in paired cancer and noncancer samples. At first, fifty-nine pairs of colorectal cancer and noncancer samples from three gene expression datasets were collected and analyzed. Then, 181 upregulation and 282 downregulation common differential expression genes (DEGs) were found. Next, functional annotation was performed in the DAVID database with the DEGs. Finally, real-time polymerase chain reaction (PCR) assay was conducted to verify the analyses in sixteen colorectal cancer and individual-matched adjacent mucosa samples. Real-time PCR showed that MCM2, RNASEH2A, and TOP2A were upregulated in colorectal cancer compared with adjacent mucosa samples (MCM2, P < 0.001; RNASEH2A, P < 0.001; TOP2A, P = 0.001). These suggested that 463 DEGs might contribute to colorectal carcinogenesis. |
format | Online Article Text |
id | pubmed-5830953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-58309532018-04-12 Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples Zhang, Lihua Yang, Yonglong Cheng, Lin Cheng, Yu Zhou, Hong-Hao Tan, Zhi-Rong Dis Markers Research Article Colorectal cancer is a malignant tumor which harmed human beings' health. The aim of this study was to explore common biomarkers associated with colorectal carcinogenesis in paired cancer and noncancer samples. At first, fifty-nine pairs of colorectal cancer and noncancer samples from three gene expression datasets were collected and analyzed. Then, 181 upregulation and 282 downregulation common differential expression genes (DEGs) were found. Next, functional annotation was performed in the DAVID database with the DEGs. Finally, real-time polymerase chain reaction (PCR) assay was conducted to verify the analyses in sixteen colorectal cancer and individual-matched adjacent mucosa samples. Real-time PCR showed that MCM2, RNASEH2A, and TOP2A were upregulated in colorectal cancer compared with adjacent mucosa samples (MCM2, P < 0.001; RNASEH2A, P < 0.001; TOP2A, P = 0.001). These suggested that 463 DEGs might contribute to colorectal carcinogenesis. Hindawi 2018-01-30 /pmc/articles/PMC5830953/ /pubmed/29651323 http://dx.doi.org/10.1155/2018/3452739 Text en Copyright © 2018 Lihua Zhang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhang, Lihua Yang, Yonglong Cheng, Lin Cheng, Yu Zhou, Hong-Hao Tan, Zhi-Rong Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples |
title | Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples |
title_full | Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples |
title_fullStr | Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples |
title_full_unstemmed | Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples |
title_short | Identification of Common Genes Refers to Colorectal Carcinogenesis with Paired Cancer and Noncancer Samples |
title_sort | identification of common genes refers to colorectal carcinogenesis with paired cancer and noncancer samples |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5830953/ https://www.ncbi.nlm.nih.gov/pubmed/29651323 http://dx.doi.org/10.1155/2018/3452739 |
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