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Transcriptome of Russet Norkotah and its clonal selection, TXNS278

OBJECTIVES: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy geneti...

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Autores principales: Levy, Julien, Tamborindeguy, Cecilia, Athrey, Giridhar, Scheuring, Douglas C., Koym, Jeffrey W., Miller, J. Creighton
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831209/
https://www.ncbi.nlm.nih.gov/pubmed/29490684
http://dx.doi.org/10.1186/s13104-018-3254-4
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author Levy, Julien
Tamborindeguy, Cecilia
Athrey, Giridhar
Scheuring, Douglas C.
Koym, Jeffrey W.
Miller, J. Creighton
author_facet Levy, Julien
Tamborindeguy, Cecilia
Athrey, Giridhar
Scheuring, Douglas C.
Koym, Jeffrey W.
Miller, J. Creighton
author_sort Levy, Julien
collection PubMed
description OBJECTIVES: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. DATA DESCRIPTION: In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-018-3254-4) contains supplementary material, which is available to authorized users.
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spelling pubmed-58312092018-03-05 Transcriptome of Russet Norkotah and its clonal selection, TXNS278 Levy, Julien Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton BMC Res Notes Data Note OBJECTIVES: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. DATA DESCRIPTION: In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-018-3254-4) contains supplementary material, which is available to authorized users. BioMed Central 2018-03-01 /pmc/articles/PMC5831209/ /pubmed/29490684 http://dx.doi.org/10.1186/s13104-018-3254-4 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Data Note
Levy, Julien
Tamborindeguy, Cecilia
Athrey, Giridhar
Scheuring, Douglas C.
Koym, Jeffrey W.
Miller, J. Creighton
Transcriptome of Russet Norkotah and its clonal selection, TXNS278
title Transcriptome of Russet Norkotah and its clonal selection, TXNS278
title_full Transcriptome of Russet Norkotah and its clonal selection, TXNS278
title_fullStr Transcriptome of Russet Norkotah and its clonal selection, TXNS278
title_full_unstemmed Transcriptome of Russet Norkotah and its clonal selection, TXNS278
title_short Transcriptome of Russet Norkotah and its clonal selection, TXNS278
title_sort transcriptome of russet norkotah and its clonal selection, txns278
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831209/
https://www.ncbi.nlm.nih.gov/pubmed/29490684
http://dx.doi.org/10.1186/s13104-018-3254-4
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