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Transcriptome of Russet Norkotah and its clonal selection, TXNS278
OBJECTIVES: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy geneti...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831209/ https://www.ncbi.nlm.nih.gov/pubmed/29490684 http://dx.doi.org/10.1186/s13104-018-3254-4 |
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author | Levy, Julien Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton |
author_facet | Levy, Julien Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton |
author_sort | Levy, Julien |
collection | PubMed |
description | OBJECTIVES: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. DATA DESCRIPTION: In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-018-3254-4) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5831209 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-58312092018-03-05 Transcriptome of Russet Norkotah and its clonal selection, TXNS278 Levy, Julien Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton BMC Res Notes Data Note OBJECTIVES: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. DATA DESCRIPTION: In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-018-3254-4) contains supplementary material, which is available to authorized users. BioMed Central 2018-03-01 /pmc/articles/PMC5831209/ /pubmed/29490684 http://dx.doi.org/10.1186/s13104-018-3254-4 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Data Note Levy, Julien Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton Transcriptome of Russet Norkotah and its clonal selection, TXNS278 |
title | Transcriptome of Russet Norkotah and its clonal selection, TXNS278 |
title_full | Transcriptome of Russet Norkotah and its clonal selection, TXNS278 |
title_fullStr | Transcriptome of Russet Norkotah and its clonal selection, TXNS278 |
title_full_unstemmed | Transcriptome of Russet Norkotah and its clonal selection, TXNS278 |
title_short | Transcriptome of Russet Norkotah and its clonal selection, TXNS278 |
title_sort | transcriptome of russet norkotah and its clonal selection, txns278 |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831209/ https://www.ncbi.nlm.nih.gov/pubmed/29490684 http://dx.doi.org/10.1186/s13104-018-3254-4 |
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