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Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles
Density functional theory (DFT) calculations were performed on a model of a ferrihydrite nanoparticle interacting with chromate ([Formula: see text] ) in water. Two configurations each of monodentate and bidentate adsorbed chromate as well as an outer-sphere and a dissolved bichromate ([Formula: see...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5832661/ https://www.ncbi.nlm.nih.gov/pubmed/29497868 http://dx.doi.org/10.1186/s12932-018-0053-8 |
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author | Kubicki, James D. Kabengi, Nadine Chrysochoou, Maria Bompoti, Nefeli |
author_facet | Kubicki, James D. Kabengi, Nadine Chrysochoou, Maria Bompoti, Nefeli |
author_sort | Kubicki, James D. |
collection | PubMed |
description | Density functional theory (DFT) calculations were performed on a model of a ferrihydrite nanoparticle interacting with chromate ([Formula: see text] ) in water. Two configurations each of monodentate and bidentate adsorbed chromate as well as an outer-sphere and a dissolved bichromate ([Formula: see text] ) were simulated. In addition to the 3-D periodic planewave DFT models, molecular clusters were extracted from the energy-minimized structures. Calculated interatomic distances from the periodic and cluster models compare favorably with Extended X-ray Absorption Fine Structure spectroscopy values, with larger discrepancies seen for the clusters due to over-relaxation of the model substrate. Relative potential energies were derived from the periodic models and Gibbs free energies from the cluster models. A key result is that the bidentate binuclear configuration is the lowest in potential energy in the periodic models followed by the outer-sphere complex. This result is consistent with observations of the predominance of bidentate chromate adsorption on ferrihydrite under conditions of high surface coverage (Johnston Environ Sci Technol 46:5851–5858, 2012). Cluster models were also used to perform frequency analyses for comparison with observed ATR FTIR spectra. Calculated frequencies on monodentate, bidentate binuclear, and outer-sphere complexes each have infrared (IR)-active modes consistent with experiment. Inconsistencies between the thermodynamic predictions and the IR-frequency analysis suggest that the 3-D periodic models are not capturing key components of the system that influence the adsorption equilibria under varying conditions of pH, ionic strength and electrolyte composition. Model equilibration via molecular dynamics (MD) simulations is necessary to escape metastable states created during DFT energy minimizations based on the initial classical force field MD-derived starting configurations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12932-018-0053-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5832661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-58326612018-03-28 Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles Kubicki, James D. Kabengi, Nadine Chrysochoou, Maria Bompoti, Nefeli Geochem Trans Research Article Density functional theory (DFT) calculations were performed on a model of a ferrihydrite nanoparticle interacting with chromate ([Formula: see text] ) in water. Two configurations each of monodentate and bidentate adsorbed chromate as well as an outer-sphere and a dissolved bichromate ([Formula: see text] ) were simulated. In addition to the 3-D periodic planewave DFT models, molecular clusters were extracted from the energy-minimized structures. Calculated interatomic distances from the periodic and cluster models compare favorably with Extended X-ray Absorption Fine Structure spectroscopy values, with larger discrepancies seen for the clusters due to over-relaxation of the model substrate. Relative potential energies were derived from the periodic models and Gibbs free energies from the cluster models. A key result is that the bidentate binuclear configuration is the lowest in potential energy in the periodic models followed by the outer-sphere complex. This result is consistent with observations of the predominance of bidentate chromate adsorption on ferrihydrite under conditions of high surface coverage (Johnston Environ Sci Technol 46:5851–5858, 2012). Cluster models were also used to perform frequency analyses for comparison with observed ATR FTIR spectra. Calculated frequencies on monodentate, bidentate binuclear, and outer-sphere complexes each have infrared (IR)-active modes consistent with experiment. Inconsistencies between the thermodynamic predictions and the IR-frequency analysis suggest that the 3-D periodic models are not capturing key components of the system that influence the adsorption equilibria under varying conditions of pH, ionic strength and electrolyte composition. Model equilibration via molecular dynamics (MD) simulations is necessary to escape metastable states created during DFT energy minimizations based on the initial classical force field MD-derived starting configurations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12932-018-0053-8) contains supplementary material, which is available to authorized users. Springer International Publishing 2018-03-01 /pmc/articles/PMC5832661/ /pubmed/29497868 http://dx.doi.org/10.1186/s12932-018-0053-8 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Kubicki, James D. Kabengi, Nadine Chrysochoou, Maria Bompoti, Nefeli Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
title | Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
title_full | Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
title_fullStr | Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
title_full_unstemmed | Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
title_short | Density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
title_sort | density functional theory modeling of chromate adsorption onto ferrihydrite nanoparticles |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5832661/ https://www.ncbi.nlm.nih.gov/pubmed/29497868 http://dx.doi.org/10.1186/s12932-018-0053-8 |
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