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Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3

Magnaporthe oryzae is a model fungal plant pathogen employed for studying plant-fungi interactions. Whole genome sequencing and bioinformatics analyses revealed that this fungal pathogen has more than 12,000 protein-coding genes with 65% of the genes remaining functionally un-annotated. Here, we det...

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Autores principales: Li, Guorui, Huang, Jinguang, Yang, Jun, He, Dan, Wang, Chao, Qi, Xiaoxuan, Taylor, Ian A., Liu, Junfeng, Peng, You-Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834530/
https://www.ncbi.nlm.nih.gov/pubmed/29500373
http://dx.doi.org/10.1038/s41598-018-21667-5
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author Li, Guorui
Huang, Jinguang
Yang, Jun
He, Dan
Wang, Chao
Qi, Xiaoxuan
Taylor, Ian A.
Liu, Junfeng
Peng, You-Liang
author_facet Li, Guorui
Huang, Jinguang
Yang, Jun
He, Dan
Wang, Chao
Qi, Xiaoxuan
Taylor, Ian A.
Liu, Junfeng
Peng, You-Liang
author_sort Li, Guorui
collection PubMed
description Magnaporthe oryzae is a model fungal plant pathogen employed for studying plant-fungi interactions. Whole genome sequencing and bioinformatics analyses revealed that this fungal pathogen has more than 12,000 protein-coding genes with 65% of the genes remaining functionally un-annotated. Here, we determine the structure of the hypothetical protein, MGG_01005 and show that it is the Magnaporthe oryzae Dynein light chain Tctex-type 1 (dynlt1/3), demonstrated by its structural similarity to other orthologous dynlt1 proteins and its conserved interaction with the N-terminus of the Magnaporthe oryzae dynein intermediate chain, MoDyn1I2. In addition, we present the structure of the MGG_01005-MoDyn1I2 complex together with mutagenesis studies that reveals a di-histidine motif interaction with a glutamate residue in the dynein intermediate chain within a conserved molecular interface. These results demonstrate the utility of structure-based annotation and validate it as a viable approach for the molecular assignment of hypothetic proteins from phyto-pathogenic fungi.
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spelling pubmed-58345302018-03-05 Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3 Li, Guorui Huang, Jinguang Yang, Jun He, Dan Wang, Chao Qi, Xiaoxuan Taylor, Ian A. Liu, Junfeng Peng, You-Liang Sci Rep Article Magnaporthe oryzae is a model fungal plant pathogen employed for studying plant-fungi interactions. Whole genome sequencing and bioinformatics analyses revealed that this fungal pathogen has more than 12,000 protein-coding genes with 65% of the genes remaining functionally un-annotated. Here, we determine the structure of the hypothetical protein, MGG_01005 and show that it is the Magnaporthe oryzae Dynein light chain Tctex-type 1 (dynlt1/3), demonstrated by its structural similarity to other orthologous dynlt1 proteins and its conserved interaction with the N-terminus of the Magnaporthe oryzae dynein intermediate chain, MoDyn1I2. In addition, we present the structure of the MGG_01005-MoDyn1I2 complex together with mutagenesis studies that reveals a di-histidine motif interaction with a glutamate residue in the dynein intermediate chain within a conserved molecular interface. These results demonstrate the utility of structure-based annotation and validate it as a viable approach for the molecular assignment of hypothetic proteins from phyto-pathogenic fungi. Nature Publishing Group UK 2018-03-02 /pmc/articles/PMC5834530/ /pubmed/29500373 http://dx.doi.org/10.1038/s41598-018-21667-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Li, Guorui
Huang, Jinguang
Yang, Jun
He, Dan
Wang, Chao
Qi, Xiaoxuan
Taylor, Ian A.
Liu, Junfeng
Peng, You-Liang
Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
title Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
title_full Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
title_fullStr Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
title_full_unstemmed Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
title_short Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
title_sort structure based function-annotation of hypothetical protein mgg_01005 from magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834530/
https://www.ncbi.nlm.nih.gov/pubmed/29500373
http://dx.doi.org/10.1038/s41598-018-21667-5
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