Cargando…

Agreement in DNA methylation levels from the Illumina 450K array across batches, tissues, and time

Epigenome-wide association studies (EWAS) have focused primarily on DNA methylation as a chemically stable and functional epigenetic modification. However, the stability and accuracy of the measurement of methylation in different tissues and extraction types is still being actively studied, and the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Forest, Marie, O'Donnell, Kieran J., Voisin, Greg, Gaudreau, Helene, MacIsaac, Julia L., McEwen, Lisa M., Silveira, Patricia P., Steiner, Meir, Kobor, Michael S., Meaney, Michael J., Greenwood, Celia M.T.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Taylor & Francis 2018
Materias:	Research Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5837078/ https://www.ncbi.nlm.nih.gov/pubmed/29381404 http://dx.doi.org/10.1080/15592294.2017.1411443

Ejemplares similares

Comparison of DNA methylation measured by Illumina 450K and EPIC BeadChips in blood of newborns and 14-year-old children
por: Solomon, Olivia, et al.
Publicado: (2018)

PRS-on-Spark (PRSoS): a novel, efficient and flexible approach for generating polygenic risk scores
por: Chen, Lawrence M., et al.
Publicado: (2018)

Dynamic interaction between fetal adversity and a genetic score reflecting dopamine function on developmental outcomes at 36 months
por: Bischoff, Adrianne R., et al.
Publicado: (2017)

Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
por: Ross, Jason P., et al.
Publicado: (2022)

A biologically-informed polygenic score identifies endophenotypes and clinical conditions associated with the insulin receptor function on specific brain regions
por: Hari Dass, Shantala A., et al.
Publicado: (2019)

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
por: Price, E Magda, et al.
Publicado: (2013)

funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types
por: Oros Klein, Kathleen, et al.
Publicado: (2016)

DNA methylome variation in a perinatal nurse-visitation program that reduces child maltreatment: a 27-year follow-up
por: O’Donnell, Kieran J., et al.
Publicado: (2018)

Infinium Monkeys: Infinium 450K Array for the Cynomolgus macaque (Macaca fascicularis)
por: Ong, Mei-Lyn, et al.
Publicado: (2014)

A pooling-based approach to mapping genetic variants associated with DNA methylation
por: Kaplow, Irene M., et al.
Publicado: (2015)

Batch effect correction for genome-wide methylation data with Illumina Infinium platform
por: Sun, Zhifu, et al.
Publicado: (2011)

Early life adversity and the epigenetic programming of hypothalamic-pituitary-adrenal function
por: Anacker, Christoph, et al.
Publicado: (2014)

Comparison of Methyl-capture Sequencing vs. Infinium 450K methylation array for methylome analysis in clinical samples
por: Teh, Ai Ling, et al.
Publicado: (2016)

Birth weight and catch up growth are associated with childhood impulsivity in two independent cohorts
por: Silveira, Patrícia P., et al.
Publicado: (2018)

Investigation of clinically acceptable agreement between two methods of automatic measurement of limb occlusion pressure: a randomised trial
por: Hughes, Luke, et al.
Publicado: (2021)

On the Analysis of the Illumina 450k Array Data: Probes Ambiguously Mapped to the Human Genome
por: Zhang, Xu, et al.
Publicado: (2012)

A data-driven approach to preprocessing Illumina 450K methylation array data
por: Pidsley, Ruth, et al.
Publicado: (2013)

Exploring genetic influences underlying acute aerobic exercise effects on motor learning
por: Mang, Cameron S., et al.
Publicado: (2017)

Airway epithelial cell isolation techniques affect DNA methylation profiles with consequences for analysis of asthma related perturbations to DNA methylation
por: Clifford, Rachel L., et al.
Publicado: (2019)

shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
por: Fortin, Jean-Philippe, et al.
Publicado: (2014)

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip
por: Xu, Zongli, et al.
Publicado: (2016)

Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses
por: Cazaly, Emma, et al.
Publicado: (2016)

Distinct DNA methylation patterns of cognitive impairment and trisomy 21 in down syndrome
por: Jones, Meaghan J, et al.
Publicado: (2013)

Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation
por: Husquin, Lucas T., et al.
Publicado: (2018)

The biological embedding of early-life socioeconomic status and family adversity in children's genome-wide DNA methylation
por: Bush, Nicole R, et al.
Publicado: (2018)

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
por: Maksimovic, Jovana, et al.
Publicado: (2012)

Quantitative cross-validation and content analysis of the 450k DNA methylation array from Illumina, Inc.
por: Roessler, Jessica, et al.
Publicado: (2012)

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
por: Chen, Yi-an, et al.
Publicado: (2013)

Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array
por: Slieker, Roderick C, et al.
Publicado: (2013)

Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data
por: Maksimovic, Jovana, et al.
Publicado: (2015)

The correlation of methylation levels measured using Illumina 450K and EPIC BeadChips in blood samples
por: Logue, Mark W, et al.
Publicado: (2017)

Differential DNA methylation and lymphocyte proportions in a Costa Rican high longevity region
por: McEwen, Lisa M., et al.
Publicado: (2017)

Integrative PheWAS analysis in risk categorization of major depressive disorder and identifying their associations with genetic variants using a latent topic model approach
por: Meng, Xiangfei, et al.
Publicado: (2022)

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
por: Marabita, Francesco, et al.
Publicado: (2013)

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
por: Wang, Zhenxing, et al.
Publicado: (2018)

Accelerated DNA methylation age in adolescent girls: associations with elevated diurnal cortisol and reduced hippocampal volume
por: Davis, E G, et al.
Publicado: (2017)

Altered DNA methylation is associated with aberrant gene expression in parenchymal but not airway fibroblasts isolated from individuals with COPD
por: Clifford, Rachel L., et al.
Publicado: (2018)

MGMIN: A Normalization Method for Correcting Probe Design Bias in Illumina Infinium HumanMethylation450 BeadChips
por: Wang, Zhenxing, et al.
Publicado: (2020)

An effective processing pipeline for harmonizing DNA methylation data from Illumina’s 450K and EPIC platforms for epidemiological studies
por: Vanderlinden, Lauren A., et al.
Publicado: (2021)

Repeatability of methylation measures using a QIAseq targeted methyl panel and comparison with the Illumina HumanMethylation450 assay
por: Yu, Chenglong, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_vb5cbbv84inomse5ija02s2bq7