Cargando…

BURRITO: An Interactive Multi-Omic Tool for Visualizing Taxa–Function Relationships in Microbiome Data

The abundance of both taxonomic groups and gene categories in microbiome samples can now be easily assayed via various sequencing technologies, and visualized using a variety of software tools. However, the assemblage of taxa in the microbiome and its gene content are clearly linked, and tools for v...

Descripción completa

Detalles Bibliográficos
Autores principales:	McNally, Colin P., Eng, Alexander, Noecker, Cecilia, Gagne-Maynard, William C., Borenstein, Elhanan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2018
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5837987/ https://www.ncbi.nlm.nih.gov/pubmed/29545787 http://dx.doi.org/10.3389/fmicb.2018.00365

Ejemplares similares

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
por: Noecker, Cecilia, et al.
Publicado: (2019)

Taxa-function robustness in microbial communities
por: Eng, Alexander, et al.
Publicado: (2018)

Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution
por: Carr, Rogan, et al.
Publicado: (2013)

The Skin Microbiome of the Neotropical Frog Craugastor fitzingeri: Inferring Potential Bacterial-Host-Pathogen Interactions From Metagenomic Data
por: Rebollar, Eria A., et al.
Publicado: (2018)

Temporal Alignment of Longitudinal Microbiome Data
por: Armoni, Ran, et al.
Publicado: (2022)

Metabolic model-based analysis of the emergence of bacterial cross-feeding via extensive gene loss
por: McNally, Colin P., et al.
Publicado: (2018)

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
por: Noecker, Cecilia, et al.
Publicado: (2016)

Proximate and biochemical characterization of burrito (Bachydeuterus auritus) and flying gurnard (Dactylopterus volitans)
por: Abbey, Lawrence D., et al.
Publicado: (2016)

Integration of multi-omics data to elucidate keystone unknown taxa within microbialite-forming ecosystems
por: Amorín de Hegedüs, Rocío, et al.
Publicado: (2023)

Effects of Rare Microbiome Taxa Filtering on Statistical Analysis
por: Cao, Quy, et al.
Publicado: (2021)

Interrogating the role of the milk microbiome in mastitis in the multi-omics era
por: Couvillion, Sneha P., et al.
Publicado: (2023)

The microbiome’s fiber degradation profile and its relationship with the host diet
por: Cohen, Yotam, et al.
Publicado: (2022)

Circadian Disruption Changes Gut Microbiome Taxa and Functional Gene Composition
por: Deaver, Jessica A., et al.
Publicado: (2018)

A Manifold-Based Framework for Studying the Dynamics of the Vaginal Microbiome
por: Tsamir-Rimon, Mor, et al.
Publicado: (2023)

Integrative multi-omics reveals the metabolic and functional diversity of microbiomes in the gut microenvironment
por: Qiu, Shi, et al.
Publicado: (2023)

Revised computational metagenomic processing uncovers hidden and biologically meaningful functional variation in the human microbiome
por: Manor, Ohad, et al.
Publicado: (2017)

Competitive lottery-based assembly of selected clades in the human gut microbiome
por: Verster, Adrian J., et al.
Publicado: (2018)

A data-driven approach for predicting the impact of drugs on the human microbiome
por: Algavi, Yadid M., et al.
Publicado: (2023)

Abundant Taxa and Favorable Pathways in the Microbiome of Soda-Saline Lakes in Inner Mongolia
por: Zhao, Dahe, et al.
Publicado: (2020)

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome
por: Manor, Ohad, et al.
Publicado: (2015)

Multi-Omics Association Reveals the Effects of Intestinal Microbiome–Host Interactions on Fat Deposition in Broilers
por: Jing, Yang, et al.
Publicado: (2022)

A meta-analysis study of the robustness and universality of gut microbiome-metabolome associations
por: Muller, Efrat, et al.
Publicado: (2021)

The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis
por: Muller, Efrat, et al.
Publicado: (2022)

Multi-Omics Analyses Characterize the Gut Microbiome and Metabolome Signatures of Soldiers Under Sustained Military Training
por: Shi, Yifan, et al.
Publicado: (2022)

Predicting Microbiome Function Across Space Is Confounded by Strain-Level Differences and Functional Redundancy Across Taxa
por: Barnes, Elle M., et al.
Publicado: (2020)

Unfolding the Human Milk Microbiome Landscape in the Omics Era
por: Ruiz, Lorena, et al.
Publicado: (2019)

Contribution of omics to biopreservation: Toward food microbiome engineering
por: Borges, Frédéric, et al.
Publicado: (2022)

Multi-Omics Approaches Revealed the Associations of Host Metabolism and Gut Microbiome With Phylogeny and Environmental Adaptation in Mountain Dragons
por: Zhu, Wei, et al.
Publicado: (2022)

MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline
por: Eng, Alexander, et al.
Publicado: (2020)

Multi-omics reveals specific host metabolism-microbiome associations in intracerebral hemorrhage
por: Chen, Lei, et al.
Publicado: (2022)

Multi-Omics Reveals That the Rumen Transcriptome, Microbiome, and Its Metabolome Co-regulate Cold Season Adaptability of Tibetan Sheep
por: Liu, Xiu, et al.
Publicado: (2022)

Multi-omics analysis reveals substantial linkages between the oral-gut microbiomes and inflamm-aging molecules in elderly pigs
por: Qiao, Chuanmin, et al.
Publicado: (2023)

Microbiome sharing between children, livestock and household surfaces in western Kenya
por: Mosites, Emily, et al.
Publicado: (2017)

Integrating phylogenetic and functional data in microbiome studies
por: Douglas, Gavin M, et al.
Publicado: (2022)

An Integrated Multi-Omics Approach Reveals the Effects of Supplementing Grass or Grass Hay with Vitamin E on the Rumen Microbiome and Its Function
por: Belanche, Alejandro, et al.
Publicado: (2016)

Application of multi-omic features clustering and pathway enrichment to clarify the impact of vitamin B2 supplementation on broiler caeca microbiome
por: Mengucci, Carlo, et al.
Publicado: (2023)

Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
por: Miyauchi, Shingo, et al.
Publicado: (2016)

Advances in multi-omics research on viral hepatitis
por: Xiang, Ze, et al.
Publicado: (2022)

Multi-Omics Approach in Amelioration of Food Products
por: Dutta, Bandita, et al.
Publicado: (2022)

Editorial: Microbiome in the first 1000 days: multi-omic interactions, physiological effects, and clinical implications
por: Taddei, Carla R., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_f4cst9gcevmmotk8h96i4pduqn