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A browser-based tool for visualization and analysis of diffusion MRI data

Human neuroscience research faces several challenges with regards to reproducibility. While scientists are generally aware that data sharing is important, it is not always clear how to share data in a manner that allows other labs to understand and reproduce published findings. Here we report a new...

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Autores principales: Yeatman, Jason D., Richie-Halford, Adam, Smith, Josh K., Keshavan, Anisha, Rokem, Ariel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5838108/
https://www.ncbi.nlm.nih.gov/pubmed/29507333
http://dx.doi.org/10.1038/s41467-018-03297-7
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author Yeatman, Jason D.
Richie-Halford, Adam
Smith, Josh K.
Keshavan, Anisha
Rokem, Ariel
author_facet Yeatman, Jason D.
Richie-Halford, Adam
Smith, Josh K.
Keshavan, Anisha
Rokem, Ariel
author_sort Yeatman, Jason D.
collection PubMed
description Human neuroscience research faces several challenges with regards to reproducibility. While scientists are generally aware that data sharing is important, it is not always clear how to share data in a manner that allows other labs to understand and reproduce published findings. Here we report a new open source tool, AFQ-Browser, that builds an interactive website as a companion to a diffusion MRI study. Because AFQ-Browser is portable—it runs in any web-browser—it can facilitate transparency and data sharing. Moreover, by leveraging new web-visualization technologies to create linked views between different dimensions of the dataset (anatomy, diffusion metrics, subject metadata), AFQ-Browser facilitates exploratory data analysis, fueling new discoveries based on previously published datasets. In an era where Big Data is playing an increasingly prominent role in scientific discovery, so will browser-based tools for exploring high-dimensional datasets, communicating scientific discoveries, aggregating data across labs, and publishing data alongside manuscripts.
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spelling pubmed-58381082018-03-08 A browser-based tool for visualization and analysis of diffusion MRI data Yeatman, Jason D. Richie-Halford, Adam Smith, Josh K. Keshavan, Anisha Rokem, Ariel Nat Commun Article Human neuroscience research faces several challenges with regards to reproducibility. While scientists are generally aware that data sharing is important, it is not always clear how to share data in a manner that allows other labs to understand and reproduce published findings. Here we report a new open source tool, AFQ-Browser, that builds an interactive website as a companion to a diffusion MRI study. Because AFQ-Browser is portable—it runs in any web-browser—it can facilitate transparency and data sharing. Moreover, by leveraging new web-visualization technologies to create linked views between different dimensions of the dataset (anatomy, diffusion metrics, subject metadata), AFQ-Browser facilitates exploratory data analysis, fueling new discoveries based on previously published datasets. In an era where Big Data is playing an increasingly prominent role in scientific discovery, so will browser-based tools for exploring high-dimensional datasets, communicating scientific discoveries, aggregating data across labs, and publishing data alongside manuscripts. Nature Publishing Group UK 2018-03-05 /pmc/articles/PMC5838108/ /pubmed/29507333 http://dx.doi.org/10.1038/s41467-018-03297-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yeatman, Jason D.
Richie-Halford, Adam
Smith, Josh K.
Keshavan, Anisha
Rokem, Ariel
A browser-based tool for visualization and analysis of diffusion MRI data
title A browser-based tool for visualization and analysis of diffusion MRI data
title_full A browser-based tool for visualization and analysis of diffusion MRI data
title_fullStr A browser-based tool for visualization and analysis of diffusion MRI data
title_full_unstemmed A browser-based tool for visualization and analysis of diffusion MRI data
title_short A browser-based tool for visualization and analysis of diffusion MRI data
title_sort browser-based tool for visualization and analysis of diffusion mri data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5838108/
https://www.ncbi.nlm.nih.gov/pubmed/29507333
http://dx.doi.org/10.1038/s41467-018-03297-7
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