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Comparison of discriminative motif optimization using matrix and DNA shape-based models

BACKGROUND: Transcription factor (TF) binding site specificity is commonly represented by some form of matrix model in which the positions in the binding site are assumed to contribute independently to the site’s activity. The independence assumption is known to be an approximation, often a good one...

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Detalles Bibliográficos
Autores principales: Ruan, Shuxiang, Stormo, Gary D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5840810/
https://www.ncbi.nlm.nih.gov/pubmed/29510689
http://dx.doi.org/10.1186/s12859-018-2104-7