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Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp)
Cowpea ( Vigna unguiculata (L.) Walp) is an important legume crop for food security in areas of low-input and smallholder farming throughout Africa and Asia. Genetic improvements are required to increase yield and resilience to biotic and abiotic stress and to enhance cowpea crop performance. An int...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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F1000 Research Limited
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841572/ https://www.ncbi.nlm.nih.gov/pubmed/29528046 http://dx.doi.org/10.12688/gatesopenres.12777.2 |
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author | Spriggs, Andrew Henderson, Steven T. Hand, Melanie L. Johnson, Susan D. Taylor, Jennifer M. Koltunow, Anna |
author_facet | Spriggs, Andrew Henderson, Steven T. Hand, Melanie L. Johnson, Susan D. Taylor, Jennifer M. Koltunow, Anna |
author_sort | Spriggs, Andrew |
collection | PubMed |
description | Cowpea ( Vigna unguiculata (L.) Walp) is an important legume crop for food security in areas of low-input and smallholder farming throughout Africa and Asia. Genetic improvements are required to increase yield and resilience to biotic and abiotic stress and to enhance cowpea crop performance. An integrated cowpea genomic and gene expression data resource has the potential to greatly accelerate breeding and the delivery of novel genetic traits for cowpea. Extensive genomic resources for cowpea have been absent from the public domain; however, a recent early release reference genome for IT97K-499-35 ( Vigna unguiculata v1.0, NSF, UCR, USAID, DOE-JGI, http://phytozome.jgi.doe.gov/) has now been established in a collaboration between the Joint Genome Institute (JGI) and University California (UC) Riverside. Here we release supporting genomic and transcriptomic data for two transformable cowpea varieties, IT97K-499-35 and IT86D-1010. The transcriptome resource includes six tissue-specific datasets for each variety, with particular emphasis on reproductive tissues that extend and support the V. unguiculata v1.0 reference. Annotations have been included in our resource to allow direct mapping to the v1.0 cowpea reference. The resource described here is supported by downloadable raw and assembled sequence data. |
format | Online Article Text |
id | pubmed-5841572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-58415722018-03-08 Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp) Spriggs, Andrew Henderson, Steven T. Hand, Melanie L. Johnson, Susan D. Taylor, Jennifer M. Koltunow, Anna Gates Open Res Data Note Cowpea ( Vigna unguiculata (L.) Walp) is an important legume crop for food security in areas of low-input and smallholder farming throughout Africa and Asia. Genetic improvements are required to increase yield and resilience to biotic and abiotic stress and to enhance cowpea crop performance. An integrated cowpea genomic and gene expression data resource has the potential to greatly accelerate breeding and the delivery of novel genetic traits for cowpea. Extensive genomic resources for cowpea have been absent from the public domain; however, a recent early release reference genome for IT97K-499-35 ( Vigna unguiculata v1.0, NSF, UCR, USAID, DOE-JGI, http://phytozome.jgi.doe.gov/) has now been established in a collaboration between the Joint Genome Institute (JGI) and University California (UC) Riverside. Here we release supporting genomic and transcriptomic data for two transformable cowpea varieties, IT97K-499-35 and IT86D-1010. The transcriptome resource includes six tissue-specific datasets for each variety, with particular emphasis on reproductive tissues that extend and support the V. unguiculata v1.0 reference. Annotations have been included in our resource to allow direct mapping to the v1.0 cowpea reference. The resource described here is supported by downloadable raw and assembled sequence data. F1000 Research Limited 2018-06-18 /pmc/articles/PMC5841572/ /pubmed/29528046 http://dx.doi.org/10.12688/gatesopenres.12777.2 Text en Copyright: © 2018 Spriggs A et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Note Spriggs, Andrew Henderson, Steven T. Hand, Melanie L. Johnson, Susan D. Taylor, Jennifer M. Koltunow, Anna Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp) |
title | Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (
Vigna unguiculata (L.) Walp) |
title_full | Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (
Vigna unguiculata (L.) Walp) |
title_fullStr | Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (
Vigna unguiculata (L.) Walp) |
title_full_unstemmed | Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (
Vigna unguiculata (L.) Walp) |
title_short | Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (
Vigna unguiculata (L.) Walp) |
title_sort | assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of cowpea (
vigna unguiculata (l.) walp) |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841572/ https://www.ncbi.nlm.nih.gov/pubmed/29528046 http://dx.doi.org/10.12688/gatesopenres.12777.2 |
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