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Real-time predictive seasonal influenza model in Catalonia, Spain

Influenza surveillance is critical to monitoring the situation during epidemic seasons and predictive mathematic models may aid the early detection of epidemic patterns. The objective of this study was to design a real-time spatial predictive model of ILI (Influenza Like Illness) incidence rate in C...

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Autores principales: Basile, Luca, Oviedo de la Fuente, Manuel, Torner, Nuria, Martínez, Ana, Jané, Mireia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841785/
https://www.ncbi.nlm.nih.gov/pubmed/29513710
http://dx.doi.org/10.1371/journal.pone.0193651
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author Basile, Luca
Oviedo de la Fuente, Manuel
Torner, Nuria
Martínez, Ana
Jané, Mireia
author_facet Basile, Luca
Oviedo de la Fuente, Manuel
Torner, Nuria
Martínez, Ana
Jané, Mireia
author_sort Basile, Luca
collection PubMed
description Influenza surveillance is critical to monitoring the situation during epidemic seasons and predictive mathematic models may aid the early detection of epidemic patterns. The objective of this study was to design a real-time spatial predictive model of ILI (Influenza Like Illness) incidence rate in Catalonia using one- and two-week forecasts. The available data sources used to select explanatory variables to include in the model were the statutory reporting disease system and the sentinel surveillance system in Catalonia for influenza incidence rates, the official climate service in Catalonia for meteorological data, laboratory data and Google Flu Trend. Time series for every explanatory variable with data from the last 4 seasons (from 2010–2011 to 2013–2014) was created. A pilot test was conducted during the 2014–2015 season to select the explanatory variables to be included in the model and the type of model to be applied. During the 2015–2016 season a real-time model was applied weekly, obtaining the intensity level and predicted incidence rates with 95% confidence levels one and two weeks away for each health region. At the end of the season, the confidence interval success rate (CISR) and intensity level success rate (ILSR) were analysed. For the 2015–2016 season a CISR of 85.3% at one week and 87.1% at two weeks and an ILSR of 82.9% and 82% were observed, respectively. The model described is a useful tool although it is hard to evaluate due to uncertainty. The accuracy of prediction at one and two weeks was above 80% globally, but was lower during the peak epidemic period. In order to improve the predictive power, new explanatory variables should be included.
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spelling pubmed-58417852018-03-23 Real-time predictive seasonal influenza model in Catalonia, Spain Basile, Luca Oviedo de la Fuente, Manuel Torner, Nuria Martínez, Ana Jané, Mireia PLoS One Research Article Influenza surveillance is critical to monitoring the situation during epidemic seasons and predictive mathematic models may aid the early detection of epidemic patterns. The objective of this study was to design a real-time spatial predictive model of ILI (Influenza Like Illness) incidence rate in Catalonia using one- and two-week forecasts. The available data sources used to select explanatory variables to include in the model were the statutory reporting disease system and the sentinel surveillance system in Catalonia for influenza incidence rates, the official climate service in Catalonia for meteorological data, laboratory data and Google Flu Trend. Time series for every explanatory variable with data from the last 4 seasons (from 2010–2011 to 2013–2014) was created. A pilot test was conducted during the 2014–2015 season to select the explanatory variables to be included in the model and the type of model to be applied. During the 2015–2016 season a real-time model was applied weekly, obtaining the intensity level and predicted incidence rates with 95% confidence levels one and two weeks away for each health region. At the end of the season, the confidence interval success rate (CISR) and intensity level success rate (ILSR) were analysed. For the 2015–2016 season a CISR of 85.3% at one week and 87.1% at two weeks and an ILSR of 82.9% and 82% were observed, respectively. The model described is a useful tool although it is hard to evaluate due to uncertainty. The accuracy of prediction at one and two weeks was above 80% globally, but was lower during the peak epidemic period. In order to improve the predictive power, new explanatory variables should be included. Public Library of Science 2018-03-07 /pmc/articles/PMC5841785/ /pubmed/29513710 http://dx.doi.org/10.1371/journal.pone.0193651 Text en © 2018 Basile et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Basile, Luca
Oviedo de la Fuente, Manuel
Torner, Nuria
Martínez, Ana
Jané, Mireia
Real-time predictive seasonal influenza model in Catalonia, Spain
title Real-time predictive seasonal influenza model in Catalonia, Spain
title_full Real-time predictive seasonal influenza model in Catalonia, Spain
title_fullStr Real-time predictive seasonal influenza model in Catalonia, Spain
title_full_unstemmed Real-time predictive seasonal influenza model in Catalonia, Spain
title_short Real-time predictive seasonal influenza model in Catalonia, Spain
title_sort real-time predictive seasonal influenza model in catalonia, spain
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841785/
https://www.ncbi.nlm.nih.gov/pubmed/29513710
http://dx.doi.org/10.1371/journal.pone.0193651
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