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ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free model comparison and parameter estimation. Our new open-source software called ABrox is used to illustrate ABC for model comparison on two pro...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5843277/ https://www.ncbi.nlm.nih.gov/pubmed/29518130 http://dx.doi.org/10.1371/journal.pone.0193981 |
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author | Mertens, Ulf Kai Voss, Andreas Radev, Stefan |
author_facet | Mertens, Ulf Kai Voss, Andreas Radev, Stefan |
author_sort | Mertens, Ulf Kai |
collection | PubMed |
description | We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free model comparison and parameter estimation. Our new open-source software called ABrox is used to illustrate ABC for model comparison on two prominent statistical tests, the two-sample t-test and the Levene-Test. We further highlight the flexibility of ABC compared to classical Bayesian hypothesis testing by computing an approximate Bayes factor for two multinomial processing tree models. Last but not least, throughout the paper, we introduce ABrox using the accompanied graphical user interface. |
format | Online Article Text |
id | pubmed-5843277 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-58432772018-03-23 ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison Mertens, Ulf Kai Voss, Andreas Radev, Stefan PLoS One Research Article We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free model comparison and parameter estimation. Our new open-source software called ABrox is used to illustrate ABC for model comparison on two prominent statistical tests, the two-sample t-test and the Levene-Test. We further highlight the flexibility of ABC compared to classical Bayesian hypothesis testing by computing an approximate Bayes factor for two multinomial processing tree models. Last but not least, throughout the paper, we introduce ABrox using the accompanied graphical user interface. Public Library of Science 2018-03-08 /pmc/articles/PMC5843277/ /pubmed/29518130 http://dx.doi.org/10.1371/journal.pone.0193981 Text en © 2018 Mertens et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Mertens, Ulf Kai Voss, Andreas Radev, Stefan ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison |
title | ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison |
title_full | ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison |
title_fullStr | ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison |
title_full_unstemmed | ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison |
title_short | ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison |
title_sort | abrox—a user-friendly python module for approximate bayesian computation with a focus on model comparison |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5843277/ https://www.ncbi.nlm.nih.gov/pubmed/29518130 http://dx.doi.org/10.1371/journal.pone.0193981 |
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