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ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison

We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free model comparison and parameter estimation. Our new open-source software called ABrox is used to illustrate ABC for model comparison on two pro...

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Detalles Bibliográficos
Autores principales: Mertens, Ulf Kai, Voss, Andreas, Radev, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5843277/
https://www.ncbi.nlm.nih.gov/pubmed/29518130
http://dx.doi.org/10.1371/journal.pone.0193981
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author Mertens, Ulf Kai
Voss, Andreas
Radev, Stefan
author_facet Mertens, Ulf Kai
Voss, Andreas
Radev, Stefan
author_sort Mertens, Ulf Kai
collection PubMed
description We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free model comparison and parameter estimation. Our new open-source software called ABrox is used to illustrate ABC for model comparison on two prominent statistical tests, the two-sample t-test and the Levene-Test. We further highlight the flexibility of ABC compared to classical Bayesian hypothesis testing by computing an approximate Bayes factor for two multinomial processing tree models. Last but not least, throughout the paper, we introduce ABrox using the accompanied graphical user interface.
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spelling pubmed-58432772018-03-23 ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison Mertens, Ulf Kai Voss, Andreas Radev, Stefan PLoS One Research Article We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free model comparison and parameter estimation. Our new open-source software called ABrox is used to illustrate ABC for model comparison on two prominent statistical tests, the two-sample t-test and the Levene-Test. We further highlight the flexibility of ABC compared to classical Bayesian hypothesis testing by computing an approximate Bayes factor for two multinomial processing tree models. Last but not least, throughout the paper, we introduce ABrox using the accompanied graphical user interface. Public Library of Science 2018-03-08 /pmc/articles/PMC5843277/ /pubmed/29518130 http://dx.doi.org/10.1371/journal.pone.0193981 Text en © 2018 Mertens et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Mertens, Ulf Kai
Voss, Andreas
Radev, Stefan
ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
title ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
title_full ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
title_fullStr ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
title_full_unstemmed ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
title_short ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison
title_sort abrox—a user-friendly python module for approximate bayesian computation with a focus on model comparison
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5843277/
https://www.ncbi.nlm.nih.gov/pubmed/29518130
http://dx.doi.org/10.1371/journal.pone.0193981
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