Cargando…

Automated high throughput animal CO1 metabarcode classification

We introduce a method for assigning names to CO1 metabarcode sequences with confidence scores in a rapid, high-throughput manner. We compiled nearly 1 million CO1 barcode sequences appropriate for classifying arthropods and chordates. Compared to our previous Insecta classifier, the current classifi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Porter, Teresita M., Hajibabaei, Mehrdad
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844909/ https://www.ncbi.nlm.nih.gov/pubmed/29523803 http://dx.doi.org/10.1038/s41598-018-22505-4

Ejemplares similares

Freshwater diatom biomonitoring through benthic kick-net metabarcoding
por: Maitland, Victoria Carley, et al.
Publicado: (2020)

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
por: Hajibabaei, Mehrdad, et al.
Publicado: (2019)

MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments
por: Porter, Teresita M., et al.
Publicado: (2022)

DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities
por: Lobo, Jorge, et al.
Publicado: (2017)

LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data
por: Rudar, Josip, et al.
Publicado: (2022)

Multi-marker DNA metabarcoding detects suites of environmental gradients from an urban harbour
por: Robinson, Chloe V., et al.
Publicado: (2022)

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
por: Hajibabaei, Mehrdad, et al.
Publicado: (2019)

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
por: Emilson, Caroline E., et al.
Publicado: (2017)

DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness
por: Bush, Alex, et al.
Publicado: (2020)

Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
por: Emilson, Caroline E., et al.
Publicado: (2018)

Over 2.5 million COI sequences in GenBank and growing
por: Porter, Teresita M., et al.
Publicado: (2018)

Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators
por: Porter, Teresita M., et al.
Publicado: (2019)

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets
por: Porter, T. M., et al.
Publicado: (2021)

Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
por: Porter, Teresita M, et al.
Publicado: (2014)

Standardized high-throughput biomonitoring using DNA metabarcoding: Strategies for the adoption of automated liquid handlers
por: Buchner, Dominik, et al.
Publicado: (2021)

Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics
por: McGee, Katie M., et al.
Publicado: (2020)

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA
por: McClenaghan, Beverly, et al.
Publicado: (2020)

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers
por: Fahner, Nicole A., et al.
Publicado: (2016)

Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes
por: McClenaghan, Beverly, et al.
Publicado: (2020)

Validation of COI metabarcoding primers for terrestrial arthropods
por: Elbrecht, Vasco, et al.
Publicado: (2019)

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas
por: Porter, Teresita M., et al.
Publicado: (2016)

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
por: Piper, Alexander M, et al.
Publicado: (2019)

Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens
por: Paul, Fiona, et al.
Publicado: (2018)

Automated Raman Micro-Spectroscopy of Epithelial Cell Nuclei for High-Throughput Classification
por: O’Dwyer, Kevin, et al.
Publicado: (2021)

Sensitivity and accuracy of high-throughput metabarcoding methods for early detection of invasive fish species
por: Hatzenbuhler, Chelsea, et al.
Publicado: (2017)

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
por: Gibson, Joel F., et al.
Publicado: (2015)

Author Correction: Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens
por: Paul, Fiona, et al.
Publicado: (2018)

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding
por: Anslan, Sten, et al.
Publicado: (2018)

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
por: Shokralla, Shadi, et al.
Publicado: (2015)

A fully automated deep learning pipeline for high-throughput colony segmentation and classification
por: Carl, Sarah H., et al.
Publicado: (2020)

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
por: Větrovský, Tomáš, et al.
Publicado: (2020)

Dung beetles as samplers of mammals in Malaysian Borneo—a test of high throughput metabarcoding of iDNA
por: Drinkwater, Rosie, et al.
Publicado: (2021)

Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater
por: Singer, G. A. C., et al.
Publicado: (2019)

Characterization of Bacterial and Fungal Community Dynamics by High-Throughput Sequencing (HTS) Metabarcoding during Flax Dew-Retting
por: Djemiel, Christophe, et al.
Publicado: (2017)

High-throughput DNA metabarcoding for determining the gut microbiome of captive critically endangered Malayan tiger (Pantheratigrisjacksoni) during fasting
por: Khairulmunir, Mohamad, et al.
Publicado: (2023)

SATINN: an automated neural network-based classification of testicular sections allows for high-throughput histopathology of mouse mutants
por: Yang, Ran, et al.
Publicado: (2022)

Dadaist2: A Toolkit to Automate and Simplify Statistical Analysis and Plotting of Metabarcoding Experiments
por: Ansorge, Rebecca, et al.
Publicado: (2021)

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia
por: Ritter, Camila D., et al.
Publicado: (2018)

Author Correction: GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
por: Větrovský, Tomáš, et al.
Publicado: (2020)

High throughput sample processing and automated scoring
por: Brunborg, Gunnar, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_q8ticms0nuqrqih3kgt3mdc275