Cargando…

Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository

The variability inherently present in biophysical data is partly contributed by disparate sampling resolutions across instrumentations. This poses a potential problem for statistical inference using pooled data in open access repositories. Such repositories combine data collected from multiple resea...

Descripción completa

Detalles Bibliográficos
Autores principales: Caballero, Carla, Mistry, Sejal, Vero, Joe, Torres, Elizabeth B
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844956/
https://www.ncbi.nlm.nih.gov/pubmed/29556179
http://dx.doi.org/10.3389/fnint.2018.00007
_version_ 1783305326697644032
author Caballero, Carla
Mistry, Sejal
Vero, Joe
Torres, Elizabeth B
author_facet Caballero, Carla
Mistry, Sejal
Vero, Joe
Torres, Elizabeth B
author_sort Caballero, Carla
collection PubMed
description The variability inherently present in biophysical data is partly contributed by disparate sampling resolutions across instrumentations. This poses a potential problem for statistical inference using pooled data in open access repositories. Such repositories combine data collected from multiple research sites using variable sampling resolutions. One example is the Autism Brain Imaging Data Exchange repository containing thousands of imaging and demographic records from participants in the spectrum of autism and age-matched neurotypical controls. Further, statistical analyses of groups from different diagnoses and demographics may be challenging, owing to the disparate number of participants across different clinical subgroups. In this paper, we examine the noise signatures of head motion data extracted from resting state fMRI data harnessed under different sampling resolutions. We characterize the quality of the noise in the variability of the raw linear and angular speeds for different clinical phenotypes in relation to age-matched controls. Further, we use bootstrapping methods to ensure compatible group sizes for statistical comparison and report the ranges of physical involuntary head excursions of these groups. We conclude that different sampling rates do affect the quality of noise in the variability of head motion data and, consequently, the type of random process appropriate to characterize the time series data. Further, given a qualitative range of noise, from pink to brown noise, it is possible to characterize different clinical subtypes and distinguish them in relation to ranges of neurotypical controls. These results may be of relevance to the pre-processing stages of the pipeline of analyses of resting state fMRI data, whereby head motion enters the criteria to clean imaging data from motion artifacts.
format Online
Article
Text
id pubmed-5844956
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-58449562018-03-19 Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository Caballero, Carla Mistry, Sejal Vero, Joe Torres, Elizabeth B Front Integr Neurosci Neuroscience The variability inherently present in biophysical data is partly contributed by disparate sampling resolutions across instrumentations. This poses a potential problem for statistical inference using pooled data in open access repositories. Such repositories combine data collected from multiple research sites using variable sampling resolutions. One example is the Autism Brain Imaging Data Exchange repository containing thousands of imaging and demographic records from participants in the spectrum of autism and age-matched neurotypical controls. Further, statistical analyses of groups from different diagnoses and demographics may be challenging, owing to the disparate number of participants across different clinical subgroups. In this paper, we examine the noise signatures of head motion data extracted from resting state fMRI data harnessed under different sampling resolutions. We characterize the quality of the noise in the variability of the raw linear and angular speeds for different clinical phenotypes in relation to age-matched controls. Further, we use bootstrapping methods to ensure compatible group sizes for statistical comparison and report the ranges of physical involuntary head excursions of these groups. We conclude that different sampling rates do affect the quality of noise in the variability of head motion data and, consequently, the type of random process appropriate to characterize the time series data. Further, given a qualitative range of noise, from pink to brown noise, it is possible to characterize different clinical subtypes and distinguish them in relation to ranges of neurotypical controls. These results may be of relevance to the pre-processing stages of the pipeline of analyses of resting state fMRI data, whereby head motion enters the criteria to clean imaging data from motion artifacts. Frontiers Media S.A. 2018-03-05 /pmc/articles/PMC5844956/ /pubmed/29556179 http://dx.doi.org/10.3389/fnint.2018.00007 Text en Copyright © 2018 Caballero, Mistry, Vero and Torres. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Caballero, Carla
Mistry, Sejal
Vero, Joe
Torres, Elizabeth B
Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository
title Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository
title_full Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository
title_fullStr Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository
title_full_unstemmed Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository
title_short Characterization of Noise Signatures of Involuntary Head Motion in the Autism Brain Imaging Data Exchange Repository
title_sort characterization of noise signatures of involuntary head motion in the autism brain imaging data exchange repository
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844956/
https://www.ncbi.nlm.nih.gov/pubmed/29556179
http://dx.doi.org/10.3389/fnint.2018.00007
work_keys_str_mv AT caballerocarla characterizationofnoisesignaturesofinvoluntaryheadmotionintheautismbrainimagingdataexchangerepository
AT mistrysejal characterizationofnoisesignaturesofinvoluntaryheadmotionintheautismbrainimagingdataexchangerepository
AT verojoe characterizationofnoisesignaturesofinvoluntaryheadmotionintheautismbrainimagingdataexchangerepository
AT torreselizabethb characterizationofnoisesignaturesofinvoluntaryheadmotionintheautismbrainimagingdataexchangerepository