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Consensus clustering approach to group brain connectivity matrices
A novel approach rooted on the notion of consensus clustering, a strategy developed for community detection in complex networks, is proposed to cope with the heterogeneity that characterizes connectivity matrices in health and disease. The method can be summarized as follows: (a) define, for each no...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5846804/ https://www.ncbi.nlm.nih.gov/pubmed/29601048 http://dx.doi.org/10.1162/NETN_a_00017 |
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author | Rasero, Javier Pellicoro, Mario Angelini, Leonardo Cortes, Jesus M. Marinazzo, Daniele Stramaglia, Sebastiano |
author_facet | Rasero, Javier Pellicoro, Mario Angelini, Leonardo Cortes, Jesus M. Marinazzo, Daniele Stramaglia, Sebastiano |
author_sort | Rasero, Javier |
collection | PubMed |
description | A novel approach rooted on the notion of consensus clustering, a strategy developed for community detection in complex networks, is proposed to cope with the heterogeneity that characterizes connectivity matrices in health and disease. The method can be summarized as follows: (a) define, for each node, a distance matrix for the set of subjects by comparing the connectivity pattern of that node in all pairs of subjects; (b) cluster the distance matrix for each node; (c) build the consensus network from the corresponding partitions; and (d) extract groups of subjects by finding the communities of the consensus network thus obtained. Different from the previous implementations of consensus clustering, we thus propose to use the consensus strategy to combine the information arising from the connectivity patterns of each node. The proposed approach may be seen either as an exploratory technique or as an unsupervised pretraining step to help the subsequent construction of a supervised classifier. Applications on a toy model and two real datasets show the effectiveness of the proposed methodology, which represents heterogeneity of a set of subjects in terms of a weighted network, the consensus matrix. |
format | Online Article Text |
id | pubmed-5846804 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-58468042018-03-27 Consensus clustering approach to group brain connectivity matrices Rasero, Javier Pellicoro, Mario Angelini, Leonardo Cortes, Jesus M. Marinazzo, Daniele Stramaglia, Sebastiano Netw Neurosci Methods A novel approach rooted on the notion of consensus clustering, a strategy developed for community detection in complex networks, is proposed to cope with the heterogeneity that characterizes connectivity matrices in health and disease. The method can be summarized as follows: (a) define, for each node, a distance matrix for the set of subjects by comparing the connectivity pattern of that node in all pairs of subjects; (b) cluster the distance matrix for each node; (c) build the consensus network from the corresponding partitions; and (d) extract groups of subjects by finding the communities of the consensus network thus obtained. Different from the previous implementations of consensus clustering, we thus propose to use the consensus strategy to combine the information arising from the connectivity patterns of each node. The proposed approach may be seen either as an exploratory technique or as an unsupervised pretraining step to help the subsequent construction of a supervised classifier. Applications on a toy model and two real datasets show the effectiveness of the proposed methodology, which represents heterogeneity of a set of subjects in terms of a weighted network, the consensus matrix. MIT Press 2017-10-01 /pmc/articles/PMC5846804/ /pubmed/29601048 http://dx.doi.org/10.1162/NETN_a_00017 Text en © 2017 Massachusetts Institute of Technology Published under a Creative Commons Attribution 4.0 International (CC BY 4.0) license http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methods Rasero, Javier Pellicoro, Mario Angelini, Leonardo Cortes, Jesus M. Marinazzo, Daniele Stramaglia, Sebastiano Consensus clustering approach to group brain connectivity matrices |
title | Consensus clustering approach to group brain connectivity matrices |
title_full | Consensus clustering approach to group brain connectivity matrices |
title_fullStr | Consensus clustering approach to group brain connectivity matrices |
title_full_unstemmed | Consensus clustering approach to group brain connectivity matrices |
title_short | Consensus clustering approach to group brain connectivity matrices |
title_sort | consensus clustering approach to group brain connectivity matrices |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5846804/ https://www.ncbi.nlm.nih.gov/pubmed/29601048 http://dx.doi.org/10.1162/NETN_a_00017 |
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