Cargando…

Performance evaluation method for read mapping tool in clinical panel sequencing

In addition to the rapid advancement in Next-Generation Sequencing (NGS) technology, clinical panel sequencing is being used increasingly in clinical studies and tests. However, tools that are used in NGS data analysis have not been comparatively evaluated in performance for panel sequencing. This s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lee, Hojun, Lee, Ki-Wook, Lee, Taeseob, Park, Donghyun, Chung, Jongsuk, Lee, Chung, Park, Woong-Yang, Son, Dae-Soon
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	The Genetics Society of Korea 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5846869/ https://www.ncbi.nlm.nih.gov/pubmed/29568413 http://dx.doi.org/10.1007/s13258-017-0621-9

Ejemplares similares

Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier
por: Chung, Jongsuk, et al.
Publicado: (2019)

The minimal amount of starting DNA for Agilent’s hybrid capture-based targeted massively parallel sequencing
por: Chung, Jongsuk, et al.
Publicado: (2016)

Clinical Targeted Next-Generation sequencing Panels for Detection of Somatic Variants in Gliomas
por: Shin, Hyemi, et al.
Publicado: (2020)

Analysis of changes in microbiome compositions related to the prognosis of colorectal cancer patients based on tissue-derived 16S rRNA sequences
por: Choi, Sukjung, et al.
Publicado: (2021)

Fast Healthcare Interoperability Resources (FHIR)–Based Quality Information Exchange for Clinical Next-Generation Sequencing Genomic Testing: Implementation Study
por: Seong, Donghyeong, et al.
Publicado: (2021)

Utility of targeted deep sequencing for detecting circulating tumor DNA in pancreatic cancer patients
por: Park, Gahee, et al.
Publicado: (2018)

Determining the best candidates for next‐generation sequencing‐based gene panel for evaluation of early‐onset epilepsy
por: Lee, Jiwon, et al.
Publicado: (2020)

Targeted Liquid Biopsy Using Irradiation to Facilitate the Release of Cell-Free DNA from a Spatially Aimed Tumor Tissue
por: Noh, Jae Myoung, et al.
Publicado: (2022)

Performance evaluation of an amplicon‐based next‐generation sequencing panel for BRCA1 and BRCA2 variant detection
por: Park, Kuenyoul, et al.
Publicado: (2020)

Paired analysis of tumor mutation burden calculated by targeted deep sequencing panel and whole exome sequencing in non-small cell lung cancer
por: Park, Sehhoon, et al.
Publicado: (2021)

Characterization of background noise in capture-based targeted sequencing data
por: Park, Gahee, et al.
Publicado: (2017)

Discovery of actionable genetic alterations with targeted panel sequencing in children with relapsed or refractory solid tumors
por: Lee, Ji Won, et al.
Publicado: (2019)

Examining the Relationship Between Past Orientation and US Suicide Rates: An Analysis Using Big Data-Driven Google Search Queries
por: Lee, Donghyun, et al.
Publicado: (2016)

Clinical advantage of targeted sequencing for unbiased tumor mutational burden estimation in samples with low tumor purity
por: Hong, Tae Hee, et al.
Publicado: (2020)

The hidden perils of read mapping as a quality assessment tool in genome sequencing
por: Lehri, B., et al.
Publicado: (2017)

Usefulness of comprehensive targeted multigene panel sequencing for neuromuscular disorders in Korean patients
por: Park, Jihye, et al.
Publicado: (2019)

Nanopore sequencing reads improve assembly and gene annotation of the Parochlus steinenii genome
por: Shin, Seung Chul, et al.
Publicado: (2019)

Biomimicking Covert Communication by Time-Frequency Shift Modulation for Increasing Mimicking and BER Performances
por: Ahn, Jongmin, et al.
Publicado: (2021)

SIDR: simultaneous isolation and parallel sequencing of genomic DNA and total RNA from single cells
por: Han, Kyung Yeon, et al.
Publicado: (2018)

Clinical usefulness of ultrasound as an early diagnostic tool for neuroleukemiosis -a case report-
por: Baek, Soon Ju, et al.
Publicado: (2021)

A p-type multi-wall carbon nanotube/Te nanorod composite with enhanced thermoelectric performance
por: Park, Dabin, et al.
Publicado: (2018)

Correction: A p-type multi-wall carbon nanotube/Te nanorod composite with enhanced thermoelectric performance
por: Park, Dabin, et al.
Publicado: (2020)

Long Read Alignment with Parallel MapReduce Cloud Platform
por: Al-Absi, Ahmed Abdulhakim, et al.
Publicado: (2015)

Detection of Fusion Genes Using a Targeted RNA Sequencing Panel in Gastrointestinal and Rare Cancers
por: Lee, Su Jin, et al.
Publicado: (2020)

Effects of Reading a Free Electronic Book on Regional Anatomy with Schematics and Mnemonics on Student Learning
por: Chung, Beom Sun, et al.
Publicado: (2020)

Effects of intubation with a double-lumen endotracheal tube on intraocular pressure during rapid sequence induction using succinylcholine chloride in patients with or without underlying systemic hypertension
por: Park, Chan-oh, et al.
Publicado: (2019)

Development and Evaluation of a Next-Generation Sequencing Panel for the Multiple Detection and Identification of Pathogens in Fermented Foods
por: Park, Dong-Geun, et al.
Publicado: (2023)

Complementary utility of targeted next-generation sequencing and immunohistochemistry panels as a screening platform to select targeted therapy for advanced gastric cancer
por: Kim, Hyo Song, et al.
Publicado: (2017)

Extracting information from free-text electronic patient records to identify practice-based evidence of the performance of coronary stents
por: Kim, Yoon Seob, et al.
Publicado: (2017)

Accelerating read mapping with FastHASH
por: Xin, Hongyi, et al.
Publicado: (2013)

SpiroESTdb: a transcriptome database and online tool for sparganum expressed sequences tags
por: Kim, Dae-Won, et al.
Publicado: (2012)

Novel next generation sequencing panel method for the multiple detection and identification of foodborne pathogens in agricultural wastewater
por: Park, Dong-Geun, et al.
Publicado: (2023)

Fast and sensitive mapping of nanopore sequencing reads with GraphMap
por: Sović, Ivan, et al.
Publicado: (2016)

Complete genome sequencing and comparative genomic analysis of Lactobacillus acidophilus C5 as a potential canine probiotics
por: Son, Seungwoo, et al.
Publicado: (2021)

ReadXplorer—visualization and analysis of mapped sequences
por: Hilker, Rolf, et al.
Publicado: (2014)

Effects of exercise on myokine gene expression in horse skeletal muscles
por: Lee, Hyo Gun, et al.
Publicado: (2019)

Circulating tumor DNA shows variable clonal response of breast cancer during neoadjuvant chemotherapy
por: Kim, Ji-Yeon, et al.
Publicado: (2017)

The Korean version of relative and absolute reliability of gait and balance assessment tools for patients with dementia in day care center and nursing home
por: Lee, Han Suk, et al.
Publicado: (2017)

Exercise and Mitochondrial Remodeling in Skeletal Muscle in Type 2 Diabetes
por: Lee, Hojun, et al.
Publicado: (2018)

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
por: Lee, Wan-Ping, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_r7she0fkh3v9qmb10uppi2kqos