TryTransDB: A web-based resource for transport proteins in Trypanosomatidae

TryTransDB is a web-based resource that stores transport protein data which can be retrieved using a standalone BLAST tool. We have attempted to create an integrated database that can be a one-stop shop for the researchers working with transport proteins of Trypanosomatidae family. TryTransDB (Trypa...

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Detalles Bibliográficos
Autores principales: Sonar, Krushna, Kabra, Ritika, Singh, Shailza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5847535/
https://www.ncbi.nlm.nih.gov/pubmed/29531295
http://dx.doi.org/10.1038/s41598-018-22706-x
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author Sonar, Krushna
Kabra, Ritika
Singh, Shailza
author_facet Sonar, Krushna
Kabra, Ritika
Singh, Shailza
author_sort Sonar, Krushna
collection PubMed
description TryTransDB is a web-based resource that stores transport protein data which can be retrieved using a standalone BLAST tool. We have attempted to create an integrated database that can be a one-stop shop for the researchers working with transport proteins of Trypanosomatidae family. TryTransDB (Trypanosomatidae Transport Protein Database) is a web based comprehensive resource that can fire a BLAST search against most of the transport protein sequences (protein and nucleotide) from Trypanosomatidae family organisms. This web resource further allows to compute a phylogenetic tree by performing multiple sequence alignment (MSA) using CLUSTALW suite embedded in it. Also, cross-linking to other databases helps in gathering more information for a certain transport protein in a single website.
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spelling pubmed-58475352018-03-19 TryTransDB: A web-based resource for transport proteins in Trypanosomatidae Sonar, Krushna Kabra, Ritika Singh, Shailza Sci Rep Article TryTransDB is a web-based resource that stores transport protein data which can be retrieved using a standalone BLAST tool. We have attempted to create an integrated database that can be a one-stop shop for the researchers working with transport proteins of Trypanosomatidae family. TryTransDB (Trypanosomatidae Transport Protein Database) is a web based comprehensive resource that can fire a BLAST search against most of the transport protein sequences (protein and nucleotide) from Trypanosomatidae family organisms. This web resource further allows to compute a phylogenetic tree by performing multiple sequence alignment (MSA) using CLUSTALW suite embedded in it. Also, cross-linking to other databases helps in gathering more information for a certain transport protein in a single website. Nature Publishing Group UK 2018-03-12 /pmc/articles/PMC5847535/ /pubmed/29531295 http://dx.doi.org/10.1038/s41598-018-22706-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Sonar, Krushna
Kabra, Ritika
Singh, Shailza
TryTransDB: A web-based resource for transport proteins in Trypanosomatidae
title TryTransDB: A web-based resource for transport proteins in Trypanosomatidae
title_full TryTransDB: A web-based resource for transport proteins in Trypanosomatidae
title_fullStr TryTransDB: A web-based resource for transport proteins in Trypanosomatidae
title_full_unstemmed TryTransDB: A web-based resource for transport proteins in Trypanosomatidae
title_short TryTransDB: A web-based resource for transport proteins in Trypanosomatidae
title_sort trytransdb: a web-based resource for transport proteins in trypanosomatidae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5847535/
https://www.ncbi.nlm.nih.gov/pubmed/29531295
http://dx.doi.org/10.1038/s41598-018-22706-x
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