Cargando…

Haplotype-based allele mining in the Japan-MAGIC rice population

Multi-parent advanced generation inter-cross (MAGIC) lines have broader genetic variation than bi-parental recombinant inbred lines. Genome-wide association study (GWAS) using high number of DNA polymorphisms such as single-nucleotide polymorphisms (SNPs) is a popular tool for allele mining in MAGIC...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ogawa, Daisuke, Yamamoto, Eiji, Ohtani, Toshikazu, Kanno, Noriko, Tsunematsu, Hiroshi, Nonoue, Yasunori, Yano, Masahiro, Yamamoto, Toshio, Yonemaru, Jun-ichi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5847589/ https://www.ncbi.nlm.nih.gov/pubmed/29531264 http://dx.doi.org/10.1038/s41598-018-22657-3

Ejemplares similares

Discovery of QTL Alleles for Grain Shape in the Japan-MAGIC Rice Population Using Haplotype Information
por: Ogawa, Daisuke, et al.
Publicado: (2018)

Haplotype analysis from unmanned aerial vehicle imagery of rice MAGIC population for the trait dissection of biomass and plant architecture
por: Ogawa, Daisuke, et al.
Publicado: (2020)

Surveillance of panicle positions by unmanned aerial vehicle to reveal morphological features of rice
por: Ogawa, Daisuke, et al.
Publicado: (2019)

Remote-Sensing-Combined Haplotype Analysis Using Multi-Parental Advanced Generation Inter-Cross Lines Reveals Phenology QTLs for Canopy Height in Rice
por: Ogawa, Daisuke, et al.
Publicado: (2021)

Genome-Wide Haplotype Changes Produced by Artificial Selection during Modern Rice Breeding in Japan
por: Yonemaru, Jun-ichi, et al.
Publicado: (2012)

OGRO: The Overview of functionally characterized Genes in Rice online database
por: Yamamoto, Eiji, et al.
Publicado: (2012)

A follow-up study for biomass yield QTLs in rice
por: Matsubara, Kazuki, et al.
Publicado: (2018)

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
por: Yamamoto, Toshio, et al.
Publicado: (2010)

Improvement of Rice Biomass Yield through QTL-Based Selection
por: Matsubara, Kazuki, et al.
Publicado: (2016)

Prediction of heading date, culm length, and biomass from canopy-height-related parameters derived from time-series UAV observations of rice
por: Taniguchi, Shoji, et al.
Publicado: (2022)

Towards the Understanding of Complex Traits in Rice: Substantially or Superficially?
por: Yamamoto, Toshio, et al.
Publicado: (2009)

Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent population: a simulation study in rice
por: Yamamoto, Eiji, et al.
Publicado: (2014)

Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars
por: Yonemaru, Jun-ichi, et al.
Publicado: (2014)

Detection of QTLs to reduce cadmium content in rice grains using LAC23/Koshihikari chromosome segment substitution lines
por: Abe, Tadashi, et al.
Publicado: (2013)

Genetic Elucidation for Response of Flowering Time to Ambient Temperatures in Asian Rice Cultivars
por: Hori, Kiyosumi, et al.
Publicado: (2021)

Natural Variation of the RICE FLOWERING LOCUS T 1 Contributes to Flowering Time Divergence in Rice
por: Ogiso-Tanaka, Eri, et al.
Publicado: (2013)

Quantitative trait loci for rice blast resistance detected in a local rice breeding population by genome-wide association mapping
por: Shinada, Hiroshi, et al.
Publicado: (2015)

Genetic mechanisms underlying yield potential in the rice high-yielding cultivar Takanari, based on reciprocal chromosome segment substitution lines
por: Takai, Toshiyuki, et al.
Publicado: (2014)

Genetic architecture of variation in heading date among Asian rice accessions
por: Hori, Kiyosumi, et al.
Publicado: (2015)

Switching genetic effects of the flowering time gene Hd1 in LD conditions by Ghd7 and OsPRR37 in rice
por: Fujino, Kenji, et al.
Publicado: (2019)

Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1
por: Nomura, Tomohiro, et al.
Publicado: (2019)

A major QTL controlling deep rooting on rice chromosome 4
por: Uga, Yusaku, et al.
Publicado: (2013)

Allele mining and enhanced genetic recombination for rice breeding
por: Leung, Hei, et al.
Publicado: (2015)

Genetic dissection of pre-harvest sprouting resistance in an upland rice cultivar
por: Mizuno, Yosuke, et al.
Publicado: (2018)

Allelic variation for broad‐spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population
por: Bossa‐Castro, Ana M., et al.
Publicado: (2018)

Allele mining unlocks the identification of RYMV resistance genes and alleles in African cultivated rice
por: Pidon, Hélène, et al.
Publicado: (2020)

Detection of heading date QTLs in advanced-backcross populations of an elite indica rice cultivar, IR64
por: Nonoue, Yasunori, et al.
Publicado: (2019)

Genome-wide indel markers shared by diverse Asian rice cultivars compared to Japanese rice cultivar ‘Koshihikari’
por: Yonemaru, Jun-ichi, et al.
Publicado: (2015)

A QTL for root growth angle on rice chromosome 7 is involved in the genetic pathway of DEEPER ROOTING 1
por: Uga, Yusaku, et al.
Publicado: (2015)

Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars
por: Hori, Kiyosumi, et al.
Publicado: (2010)

Genetic dissection of agronomically important traits in closely related temperate japonica rice cultivars
por: Hori, Kiyosumi, et al.
Publicado: (2017)

Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0
por: Chun-Chao, Wang, et al.
Publicado: (2019)

Quantitative trait loci for whiteness of cooked rice detected in improved rice cultivars in Hokkaido
por: Shinada, Hiroshi, et al.
Publicado: (2015)

Koshihikari: a premium short-grain rice cultivar – its expansion and breeding in Japan
por: Kobayashi, Asako, et al.
Publicado: (2018)

Identification of Novel Alleles of the Rice Blast-Resistance Gene Pi9 through Sequence-Based Allele Mining
por: Zhou, Ying, et al.
Publicado: (2020)

Dose-Dependent Effects of Barley Cooked with White Rice on Postprandial Glucose and Desacyl Ghrelin Levels
por: Sakuma, Masae, et al.
Publicado: (2009)

Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism
por: Matsuda, Fumio, et al.
Publicado: (2015)

PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
por: Voorrips, Roeland E., et al.
Publicado: (2022)

Joint Mapping and Allele Mining of the Rolled Leaf Trait in Rice (Oryza sativa L.)
por: Zhang, Qiang, et al.
Publicado: (2016)

Functional characterization and allelic mining of OsGLR genes for potential uses in rice improvement
por: Zeng, Wei, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_p4p6rr571ddqgkv8rhv9g0iaua