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Faster Evolving Primate Genes Are More Likely to Duplicate

An attractive and long-standing hypothesis regarding the evolution of genes after duplication posits that the duplication event creates new evolutionary possibilities by releasing a copy of the gene from constraint. Apparent support was found in numerous analyses, particularly, the observation of hi...

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Autores principales: O’Toole, Áine N, Hurst, Laurence D, McLysaght, Aoife
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850500/
https://www.ncbi.nlm.nih.gov/pubmed/29126243
http://dx.doi.org/10.1093/molbev/msx270
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author O’Toole, Áine N
Hurst, Laurence D
McLysaght, Aoife
author_facet O’Toole, Áine N
Hurst, Laurence D
McLysaght, Aoife
author_sort O’Toole, Áine N
collection PubMed
description An attractive and long-standing hypothesis regarding the evolution of genes after duplication posits that the duplication event creates new evolutionary possibilities by releasing a copy of the gene from constraint. Apparent support was found in numerous analyses, particularly, the observation of higher rates of evolution in duplicated as compared with singleton genes. Could it, instead, be that more duplicable genes (owing to mutation, fixation, or retention biases) are intrinsically faster evolving? To uncouple the measurement of rates of evolution from the determination of duplicate or singleton status, we measure the rates of evolution in singleton genes in outgroup primate lineages but classify these genes as to whether they have duplicated or not in a crown group of great apes. We find that rates of evolution are higher in duplicable genes prior to the duplication event. In part this is owing to a negative correlation between coding sequence length and rate of evolution, coupled with a bias toward smaller genes being more duplicable. The effect is masked by difference in expression rate between duplicable genes and singletons. Additionally, in contradiction to the classical assumption, we find no convincing evidence for an increase in [Formula: see text] after duplication, nor for rate asymmetry between duplicates. We conclude that high rates of evolution of duplicated genes are not solely a consequence of the duplication event, but are rather a predictor of duplicability. These results are consistent with a model in which successful gene duplication events in mammals are skewed toward events of minimal phenotypic impact.
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spelling pubmed-58505002018-03-23 Faster Evolving Primate Genes Are More Likely to Duplicate O’Toole, Áine N Hurst, Laurence D McLysaght, Aoife Mol Biol Evol Discoveries An attractive and long-standing hypothesis regarding the evolution of genes after duplication posits that the duplication event creates new evolutionary possibilities by releasing a copy of the gene from constraint. Apparent support was found in numerous analyses, particularly, the observation of higher rates of evolution in duplicated as compared with singleton genes. Could it, instead, be that more duplicable genes (owing to mutation, fixation, or retention biases) are intrinsically faster evolving? To uncouple the measurement of rates of evolution from the determination of duplicate or singleton status, we measure the rates of evolution in singleton genes in outgroup primate lineages but classify these genes as to whether they have duplicated or not in a crown group of great apes. We find that rates of evolution are higher in duplicable genes prior to the duplication event. In part this is owing to a negative correlation between coding sequence length and rate of evolution, coupled with a bias toward smaller genes being more duplicable. The effect is masked by difference in expression rate between duplicable genes and singletons. Additionally, in contradiction to the classical assumption, we find no convincing evidence for an increase in [Formula: see text] after duplication, nor for rate asymmetry between duplicates. We conclude that high rates of evolution of duplicated genes are not solely a consequence of the duplication event, but are rather a predictor of duplicability. These results are consistent with a model in which successful gene duplication events in mammals are skewed toward events of minimal phenotypic impact. Oxford University Press 2018-01 2017-11-07 /pmc/articles/PMC5850500/ /pubmed/29126243 http://dx.doi.org/10.1093/molbev/msx270 Text en © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Discoveries
O’Toole, Áine N
Hurst, Laurence D
McLysaght, Aoife
Faster Evolving Primate Genes Are More Likely to Duplicate
title Faster Evolving Primate Genes Are More Likely to Duplicate
title_full Faster Evolving Primate Genes Are More Likely to Duplicate
title_fullStr Faster Evolving Primate Genes Are More Likely to Duplicate
title_full_unstemmed Faster Evolving Primate Genes Are More Likely to Duplicate
title_short Faster Evolving Primate Genes Are More Likely to Duplicate
title_sort faster evolving primate genes are more likely to duplicate
topic Discoveries
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850500/
https://www.ncbi.nlm.nih.gov/pubmed/29126243
http://dx.doi.org/10.1093/molbev/msx270
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