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Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants

PREMISE OF THE STUDY: Herbarium specimens provide a robust record of historical plant phenology (the timing of seasonal events such as flowering or fruiting). However, the difficulty of aggregating phenological data from specimens arises from a lack of standardized scoring methods and definitions fo...

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Autores principales: Yost, Jennifer M., Sweeney, Patrick W., Gilbert, Ed, Nelson, Gil, Guralnick, Robert, Gallinat, Amanda S., Ellwood, Elizabeth R., Rossington, Natalie, Willis, Charles G., Blum, Stanley D., Walls, Ramona L., Haston, Elspeth M., Denslow, Michael W., Zohner, Constantin M., Morris, Ashley B., Stucky, Brian J., Carter, J. Richard, Baxter, David G., Bolmgren, Kjell, Denny, Ellen G., Dean, Ellen, Pearson, Katelin D., Davis, Charles C., Mishler, Brent D., Soltis, Pamela S., Mazer, Susan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851559/
https://www.ncbi.nlm.nih.gov/pubmed/29732253
http://dx.doi.org/10.1002/aps3.1022
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author Yost, Jennifer M.
Sweeney, Patrick W.
Gilbert, Ed
Nelson, Gil
Guralnick, Robert
Gallinat, Amanda S.
Ellwood, Elizabeth R.
Rossington, Natalie
Willis, Charles G.
Blum, Stanley D.
Walls, Ramona L.
Haston, Elspeth M.
Denslow, Michael W.
Zohner, Constantin M.
Morris, Ashley B.
Stucky, Brian J.
Carter, J. Richard
Baxter, David G.
Bolmgren, Kjell
Denny, Ellen G.
Dean, Ellen
Pearson, Katelin D.
Davis, Charles C.
Mishler, Brent D.
Soltis, Pamela S.
Mazer, Susan J.
author_facet Yost, Jennifer M.
Sweeney, Patrick W.
Gilbert, Ed
Nelson, Gil
Guralnick, Robert
Gallinat, Amanda S.
Ellwood, Elizabeth R.
Rossington, Natalie
Willis, Charles G.
Blum, Stanley D.
Walls, Ramona L.
Haston, Elspeth M.
Denslow, Michael W.
Zohner, Constantin M.
Morris, Ashley B.
Stucky, Brian J.
Carter, J. Richard
Baxter, David G.
Bolmgren, Kjell
Denny, Ellen G.
Dean, Ellen
Pearson, Katelin D.
Davis, Charles C.
Mishler, Brent D.
Soltis, Pamela S.
Mazer, Susan J.
author_sort Yost, Jennifer M.
collection PubMed
description PREMISE OF THE STUDY: Herbarium specimens provide a robust record of historical plant phenology (the timing of seasonal events such as flowering or fruiting). However, the difficulty of aggregating phenological data from specimens arises from a lack of standardized scoring methods and definitions for phenological states across the collections community. METHODS AND RESULTS: To address this problem, we report on a consensus reached by an iDigBio working group of curators, researchers, and data standards experts regarding an efficient scoring protocol and a data‐sharing protocol for reproductive traits available from herbarium specimens of seed plants. The phenological data sets generated can be shared via Darwin Core Archives using the Extended MeasurementOrFact extension. CONCLUSIONS: Our hope is that curators and others interested in collecting phenological trait data from specimens will use the recommendations presented here in current and future scoring efforts. New tools for scoring specimens are reviewed.
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spelling pubmed-58515592018-05-04 Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants Yost, Jennifer M. Sweeney, Patrick W. Gilbert, Ed Nelson, Gil Guralnick, Robert Gallinat, Amanda S. Ellwood, Elizabeth R. Rossington, Natalie Willis, Charles G. Blum, Stanley D. Walls, Ramona L. Haston, Elspeth M. Denslow, Michael W. Zohner, Constantin M. Morris, Ashley B. Stucky, Brian J. Carter, J. Richard Baxter, David G. Bolmgren, Kjell Denny, Ellen G. Dean, Ellen Pearson, Katelin D. Davis, Charles C. Mishler, Brent D. Soltis, Pamela S. Mazer, Susan J. Appl Plant Sci Protocol Notes PREMISE OF THE STUDY: Herbarium specimens provide a robust record of historical plant phenology (the timing of seasonal events such as flowering or fruiting). However, the difficulty of aggregating phenological data from specimens arises from a lack of standardized scoring methods and definitions for phenological states across the collections community. METHODS AND RESULTS: To address this problem, we report on a consensus reached by an iDigBio working group of curators, researchers, and data standards experts regarding an efficient scoring protocol and a data‐sharing protocol for reproductive traits available from herbarium specimens of seed plants. The phenological data sets generated can be shared via Darwin Core Archives using the Extended MeasurementOrFact extension. CONCLUSIONS: Our hope is that curators and others interested in collecting phenological trait data from specimens will use the recommendations presented here in current and future scoring efforts. New tools for scoring specimens are reviewed. John Wiley and Sons Inc. 2018-02-28 /pmc/articles/PMC5851559/ /pubmed/29732253 http://dx.doi.org/10.1002/aps3.1022 Text en © 2018 Yost et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Protocol Notes
Yost, Jennifer M.
Sweeney, Patrick W.
Gilbert, Ed
Nelson, Gil
Guralnick, Robert
Gallinat, Amanda S.
Ellwood, Elizabeth R.
Rossington, Natalie
Willis, Charles G.
Blum, Stanley D.
Walls, Ramona L.
Haston, Elspeth M.
Denslow, Michael W.
Zohner, Constantin M.
Morris, Ashley B.
Stucky, Brian J.
Carter, J. Richard
Baxter, David G.
Bolmgren, Kjell
Denny, Ellen G.
Dean, Ellen
Pearson, Katelin D.
Davis, Charles C.
Mishler, Brent D.
Soltis, Pamela S.
Mazer, Susan J.
Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
title Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
title_full Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
title_fullStr Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
title_full_unstemmed Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
title_short Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
title_sort digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
topic Protocol Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851559/
https://www.ncbi.nlm.nih.gov/pubmed/29732253
http://dx.doi.org/10.1002/aps3.1022
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