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Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
PREMISE OF THE STUDY: Herbarium specimens provide a robust record of historical plant phenology (the timing of seasonal events such as flowering or fruiting). However, the difficulty of aggregating phenological data from specimens arises from a lack of standardized scoring methods and definitions fo...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851559/ https://www.ncbi.nlm.nih.gov/pubmed/29732253 http://dx.doi.org/10.1002/aps3.1022 |
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author | Yost, Jennifer M. Sweeney, Patrick W. Gilbert, Ed Nelson, Gil Guralnick, Robert Gallinat, Amanda S. Ellwood, Elizabeth R. Rossington, Natalie Willis, Charles G. Blum, Stanley D. Walls, Ramona L. Haston, Elspeth M. Denslow, Michael W. Zohner, Constantin M. Morris, Ashley B. Stucky, Brian J. Carter, J. Richard Baxter, David G. Bolmgren, Kjell Denny, Ellen G. Dean, Ellen Pearson, Katelin D. Davis, Charles C. Mishler, Brent D. Soltis, Pamela S. Mazer, Susan J. |
author_facet | Yost, Jennifer M. Sweeney, Patrick W. Gilbert, Ed Nelson, Gil Guralnick, Robert Gallinat, Amanda S. Ellwood, Elizabeth R. Rossington, Natalie Willis, Charles G. Blum, Stanley D. Walls, Ramona L. Haston, Elspeth M. Denslow, Michael W. Zohner, Constantin M. Morris, Ashley B. Stucky, Brian J. Carter, J. Richard Baxter, David G. Bolmgren, Kjell Denny, Ellen G. Dean, Ellen Pearson, Katelin D. Davis, Charles C. Mishler, Brent D. Soltis, Pamela S. Mazer, Susan J. |
author_sort | Yost, Jennifer M. |
collection | PubMed |
description | PREMISE OF THE STUDY: Herbarium specimens provide a robust record of historical plant phenology (the timing of seasonal events such as flowering or fruiting). However, the difficulty of aggregating phenological data from specimens arises from a lack of standardized scoring methods and definitions for phenological states across the collections community. METHODS AND RESULTS: To address this problem, we report on a consensus reached by an iDigBio working group of curators, researchers, and data standards experts regarding an efficient scoring protocol and a data‐sharing protocol for reproductive traits available from herbarium specimens of seed plants. The phenological data sets generated can be shared via Darwin Core Archives using the Extended MeasurementOrFact extension. CONCLUSIONS: Our hope is that curators and others interested in collecting phenological trait data from specimens will use the recommendations presented here in current and future scoring efforts. New tools for scoring specimens are reviewed. |
format | Online Article Text |
id | pubmed-5851559 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58515592018-05-04 Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants Yost, Jennifer M. Sweeney, Patrick W. Gilbert, Ed Nelson, Gil Guralnick, Robert Gallinat, Amanda S. Ellwood, Elizabeth R. Rossington, Natalie Willis, Charles G. Blum, Stanley D. Walls, Ramona L. Haston, Elspeth M. Denslow, Michael W. Zohner, Constantin M. Morris, Ashley B. Stucky, Brian J. Carter, J. Richard Baxter, David G. Bolmgren, Kjell Denny, Ellen G. Dean, Ellen Pearson, Katelin D. Davis, Charles C. Mishler, Brent D. Soltis, Pamela S. Mazer, Susan J. Appl Plant Sci Protocol Notes PREMISE OF THE STUDY: Herbarium specimens provide a robust record of historical plant phenology (the timing of seasonal events such as flowering or fruiting). However, the difficulty of aggregating phenological data from specimens arises from a lack of standardized scoring methods and definitions for phenological states across the collections community. METHODS AND RESULTS: To address this problem, we report on a consensus reached by an iDigBio working group of curators, researchers, and data standards experts regarding an efficient scoring protocol and a data‐sharing protocol for reproductive traits available from herbarium specimens of seed plants. The phenological data sets generated can be shared via Darwin Core Archives using the Extended MeasurementOrFact extension. CONCLUSIONS: Our hope is that curators and others interested in collecting phenological trait data from specimens will use the recommendations presented here in current and future scoring efforts. New tools for scoring specimens are reviewed. John Wiley and Sons Inc. 2018-02-28 /pmc/articles/PMC5851559/ /pubmed/29732253 http://dx.doi.org/10.1002/aps3.1022 Text en © 2018 Yost et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Protocol Notes Yost, Jennifer M. Sweeney, Patrick W. Gilbert, Ed Nelson, Gil Guralnick, Robert Gallinat, Amanda S. Ellwood, Elizabeth R. Rossington, Natalie Willis, Charles G. Blum, Stanley D. Walls, Ramona L. Haston, Elspeth M. Denslow, Michael W. Zohner, Constantin M. Morris, Ashley B. Stucky, Brian J. Carter, J. Richard Baxter, David G. Bolmgren, Kjell Denny, Ellen G. Dean, Ellen Pearson, Katelin D. Davis, Charles C. Mishler, Brent D. Soltis, Pamela S. Mazer, Susan J. Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
title | Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
title_full | Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
title_fullStr | Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
title_full_unstemmed | Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
title_short | Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
title_sort | digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants |
topic | Protocol Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851559/ https://www.ncbi.nlm.nih.gov/pubmed/29732253 http://dx.doi.org/10.1002/aps3.1022 |
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