Cargando…

Species distribution modeling based on the automated identification of citizen observations

PREMISE OF THE STUDY: A species distribution model computed with automatically identified plant observations was developed and evaluated to contribute to future ecological studies. METHODS: We used deep learning techniques to automatically identify opportunistic plant observations made by citizens t...

Descripción completa

Detalles Bibliográficos
Autores principales: Botella, Christophe, Joly, Alexis, Bonnet, Pierre, Monestiez, Pascal, Munoz, François
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851560/
https://www.ncbi.nlm.nih.gov/pubmed/29732259
http://dx.doi.org/10.1002/aps3.1029
_version_ 1783306407512113152
author Botella, Christophe
Joly, Alexis
Bonnet, Pierre
Monestiez, Pascal
Munoz, François
author_facet Botella, Christophe
Joly, Alexis
Bonnet, Pierre
Monestiez, Pascal
Munoz, François
author_sort Botella, Christophe
collection PubMed
description PREMISE OF THE STUDY: A species distribution model computed with automatically identified plant observations was developed and evaluated to contribute to future ecological studies. METHODS: We used deep learning techniques to automatically identify opportunistic plant observations made by citizens through a popular mobile application. We compared species distribution modeling of invasive alien plants based on these data to inventories made by experts. RESULTS: The trained models have a reasonable predictive effectiveness for some species, but they are biased by the massive presence of cultivated specimens. DISCUSSION: The method proposed here allows for fine‐grained and regular monitoring of some species of interest based on opportunistic observations. More in‐depth investigation of the typology of the observations and the sampling bias should help improve the approach in the future.
format Online
Article
Text
id pubmed-5851560
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-58515602018-05-04 Species distribution modeling based on the automated identification of citizen observations Botella, Christophe Joly, Alexis Bonnet, Pierre Monestiez, Pascal Munoz, François Appl Plant Sci Application Articles PREMISE OF THE STUDY: A species distribution model computed with automatically identified plant observations was developed and evaluated to contribute to future ecological studies. METHODS: We used deep learning techniques to automatically identify opportunistic plant observations made by citizens through a popular mobile application. We compared species distribution modeling of invasive alien plants based on these data to inventories made by experts. RESULTS: The trained models have a reasonable predictive effectiveness for some species, but they are biased by the massive presence of cultivated specimens. DISCUSSION: The method proposed here allows for fine‐grained and regular monitoring of some species of interest based on opportunistic observations. More in‐depth investigation of the typology of the observations and the sampling bias should help improve the approach in the future. John Wiley and Sons Inc. 2018-03-14 /pmc/articles/PMC5851560/ /pubmed/29732259 http://dx.doi.org/10.1002/aps3.1029 Text en © 2018 Botella et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Application Articles
Botella, Christophe
Joly, Alexis
Bonnet, Pierre
Monestiez, Pascal
Munoz, François
Species distribution modeling based on the automated identification of citizen observations
title Species distribution modeling based on the automated identification of citizen observations
title_full Species distribution modeling based on the automated identification of citizen observations
title_fullStr Species distribution modeling based on the automated identification of citizen observations
title_full_unstemmed Species distribution modeling based on the automated identification of citizen observations
title_short Species distribution modeling based on the automated identification of citizen observations
title_sort species distribution modeling based on the automated identification of citizen observations
topic Application Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851560/
https://www.ncbi.nlm.nih.gov/pubmed/29732259
http://dx.doi.org/10.1002/aps3.1029
work_keys_str_mv AT botellachristophe speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT jolyalexis speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT bonnetpierre speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT monestiezpascal speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT munozfrancois speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations