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Classifying dynamic transitions in high dimensional neural mass models: A random forest approach

Neural mass models (NMMs) are increasingly used to uncover the large-scale mechanisms of brain rhythms in health and disease. The dynamics of these models is dependent upon the choice of parameters, and therefore it is crucial to be able to understand how dynamics change when parameters are varied....

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Detalles Bibliográficos
Autores principales: Ferrat, Lauric A., Goodfellow, Marc, Terry, John R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851637/
https://www.ncbi.nlm.nih.gov/pubmed/29499044
http://dx.doi.org/10.1371/journal.pcbi.1006009
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author Ferrat, Lauric A.
Goodfellow, Marc
Terry, John R.
author_facet Ferrat, Lauric A.
Goodfellow, Marc
Terry, John R.
author_sort Ferrat, Lauric A.
collection PubMed
description Neural mass models (NMMs) are increasingly used to uncover the large-scale mechanisms of brain rhythms in health and disease. The dynamics of these models is dependent upon the choice of parameters, and therefore it is crucial to be able to understand how dynamics change when parameters are varied. Despite being considered low dimensional in comparison to micro-scale, neuronal network models, with regards to understanding the relationship between parameters and dynamics, NMMs are still prohibitively high dimensional for classical approaches such as numerical continuation. Therefore, we need alternative methods to characterise dynamics of NMMs in high dimensional parameter spaces. Here, we introduce a statistical framework that enables the efficient exploration of the relationship between model parameters and selected features of the simulated, emergent model dynamics of NMMs. We combine the classical machine learning approaches of trees and random forests to enable studying the effect that varying multiple parameters has on the dynamics of a model. The method proceeds by using simulations to transform the mathematical model into a database. This database is then used to partition parameter space with respect to dynamic features of interest, using random forests. This allows us to rapidly explore dynamics in high dimensional parameter space, capture the approximate location of qualitative transitions in dynamics and assess the relative importance of all parameters in the model in all dimensions simultaneously. We apply this method to a commonly used NMM in the context of transitions to seizure dynamics. We find that the inhibitory sub-system is most crucial for the generation of seizure dynamics, confirm and expand previous findings regarding the ratio of excitation and inhibition, and demonstrate that previously overlooked parameters can have a significant impact on model dynamics. We advocate the use of this method in future to constrain high dimensional parameter spaces enabling more efficient, person-specific, model calibration.
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spelling pubmed-58516372018-03-23 Classifying dynamic transitions in high dimensional neural mass models: A random forest approach Ferrat, Lauric A. Goodfellow, Marc Terry, John R. PLoS Comput Biol Research Article Neural mass models (NMMs) are increasingly used to uncover the large-scale mechanisms of brain rhythms in health and disease. The dynamics of these models is dependent upon the choice of parameters, and therefore it is crucial to be able to understand how dynamics change when parameters are varied. Despite being considered low dimensional in comparison to micro-scale, neuronal network models, with regards to understanding the relationship between parameters and dynamics, NMMs are still prohibitively high dimensional for classical approaches such as numerical continuation. Therefore, we need alternative methods to characterise dynamics of NMMs in high dimensional parameter spaces. Here, we introduce a statistical framework that enables the efficient exploration of the relationship between model parameters and selected features of the simulated, emergent model dynamics of NMMs. We combine the classical machine learning approaches of trees and random forests to enable studying the effect that varying multiple parameters has on the dynamics of a model. The method proceeds by using simulations to transform the mathematical model into a database. This database is then used to partition parameter space with respect to dynamic features of interest, using random forests. This allows us to rapidly explore dynamics in high dimensional parameter space, capture the approximate location of qualitative transitions in dynamics and assess the relative importance of all parameters in the model in all dimensions simultaneously. We apply this method to a commonly used NMM in the context of transitions to seizure dynamics. We find that the inhibitory sub-system is most crucial for the generation of seizure dynamics, confirm and expand previous findings regarding the ratio of excitation and inhibition, and demonstrate that previously overlooked parameters can have a significant impact on model dynamics. We advocate the use of this method in future to constrain high dimensional parameter spaces enabling more efficient, person-specific, model calibration. Public Library of Science 2018-03-02 /pmc/articles/PMC5851637/ /pubmed/29499044 http://dx.doi.org/10.1371/journal.pcbi.1006009 Text en © 2018 Ferrat et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ferrat, Lauric A.
Goodfellow, Marc
Terry, John R.
Classifying dynamic transitions in high dimensional neural mass models: A random forest approach
title Classifying dynamic transitions in high dimensional neural mass models: A random forest approach
title_full Classifying dynamic transitions in high dimensional neural mass models: A random forest approach
title_fullStr Classifying dynamic transitions in high dimensional neural mass models: A random forest approach
title_full_unstemmed Classifying dynamic transitions in high dimensional neural mass models: A random forest approach
title_short Classifying dynamic transitions in high dimensional neural mass models: A random forest approach
title_sort classifying dynamic transitions in high dimensional neural mass models: a random forest approach
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851637/
https://www.ncbi.nlm.nih.gov/pubmed/29499044
http://dx.doi.org/10.1371/journal.pcbi.1006009
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