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Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes

A lipolytic screening with fungal strains isolated from lignocellulosic waste collected in banana plantation dumps was carried out. A Trichoderma harzianum strain (B13-1) showed good extracellular lipolytic activity (205 UmL(−1)). Subsequently, functional screening of the lipolytic activity on Rhoda...

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Autores principales: Canseco-Pérez, Miguel Angel, Castillo-Avila, Genny Margarita, Chi-Manzanero, Bartolomé, Islas-Flores, Ignacio, Apolinar-Hernández, Max M., Rivera-Muñoz, Gerardo, Gamboa-Angulo, Marcela, Sanchez-Teyer, Felipe, Couoh-Uicab, Yeny, Canto-Canché, Blondy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5852558/
https://www.ncbi.nlm.nih.gov/pubmed/29370083
http://dx.doi.org/10.3390/genes9020062
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author Canseco-Pérez, Miguel Angel
Castillo-Avila, Genny Margarita
Chi-Manzanero, Bartolomé
Islas-Flores, Ignacio
Apolinar-Hernández, Max M.
Rivera-Muñoz, Gerardo
Gamboa-Angulo, Marcela
Sanchez-Teyer, Felipe
Couoh-Uicab, Yeny
Canto-Canché, Blondy
author_facet Canseco-Pérez, Miguel Angel
Castillo-Avila, Genny Margarita
Chi-Manzanero, Bartolomé
Islas-Flores, Ignacio
Apolinar-Hernández, Max M.
Rivera-Muñoz, Gerardo
Gamboa-Angulo, Marcela
Sanchez-Teyer, Felipe
Couoh-Uicab, Yeny
Canto-Canché, Blondy
author_sort Canseco-Pérez, Miguel Angel
collection PubMed
description A lipolytic screening with fungal strains isolated from lignocellulosic waste collected in banana plantation dumps was carried out. A Trichoderma harzianum strain (B13-1) showed good extracellular lipolytic activity (205 UmL(−1)). Subsequently, functional screening of the lipolytic activity on Rhodamine B enriched with olive oil as the only carbon source was performed. The successful growth of the strain allows us to suggest that a true lipase is responsible for the lipolytic activity in the B13-1 strain. In order to identify the gene(s) encoding the protein responsible for the lipolytic activity, in silico identification and characterization of triacylglycerol lipases from T. harzianum is reported for the first time. A survey in the genome of this fungus retrieved 50 lipases; however, bioinformatic analyses and putative functional descriptions in different databases allowed us to choose seven lipases as candidates. Suitability of the bioinformatic screening to select the candidates was confirmed by reverse transcription polymerase chain reaction (RT-PCR). The gene codifying 526309 was expressed when the fungus grew in a medium with olive oil as carbon source. This protein shares homology with commercial lipases, making it a candidate for further applications. The success in identifying a lipase gene inducible with olive oil and the suitability of the functional screening and bioinformatic survey carried out herein, support the premise that the strategy can be used in other microorganisms with sequenced genomes to search for true lipases, or other enzymes belonging to large protein families.
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spelling pubmed-58525582018-03-19 Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes Canseco-Pérez, Miguel Angel Castillo-Avila, Genny Margarita Chi-Manzanero, Bartolomé Islas-Flores, Ignacio Apolinar-Hernández, Max M. Rivera-Muñoz, Gerardo Gamboa-Angulo, Marcela Sanchez-Teyer, Felipe Couoh-Uicab, Yeny Canto-Canché, Blondy Genes (Basel) Article A lipolytic screening with fungal strains isolated from lignocellulosic waste collected in banana plantation dumps was carried out. A Trichoderma harzianum strain (B13-1) showed good extracellular lipolytic activity (205 UmL(−1)). Subsequently, functional screening of the lipolytic activity on Rhodamine B enriched with olive oil as the only carbon source was performed. The successful growth of the strain allows us to suggest that a true lipase is responsible for the lipolytic activity in the B13-1 strain. In order to identify the gene(s) encoding the protein responsible for the lipolytic activity, in silico identification and characterization of triacylglycerol lipases from T. harzianum is reported for the first time. A survey in the genome of this fungus retrieved 50 lipases; however, bioinformatic analyses and putative functional descriptions in different databases allowed us to choose seven lipases as candidates. Suitability of the bioinformatic screening to select the candidates was confirmed by reverse transcription polymerase chain reaction (RT-PCR). The gene codifying 526309 was expressed when the fungus grew in a medium with olive oil as carbon source. This protein shares homology with commercial lipases, making it a candidate for further applications. The success in identifying a lipase gene inducible with olive oil and the suitability of the functional screening and bioinformatic survey carried out herein, support the premise that the strategy can be used in other microorganisms with sequenced genomes to search for true lipases, or other enzymes belonging to large protein families. MDPI 2018-01-25 /pmc/articles/PMC5852558/ /pubmed/29370083 http://dx.doi.org/10.3390/genes9020062 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Canseco-Pérez, Miguel Angel
Castillo-Avila, Genny Margarita
Chi-Manzanero, Bartolomé
Islas-Flores, Ignacio
Apolinar-Hernández, Max M.
Rivera-Muñoz, Gerardo
Gamboa-Angulo, Marcela
Sanchez-Teyer, Felipe
Couoh-Uicab, Yeny
Canto-Canché, Blondy
Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes
title Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes
title_full Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes
title_fullStr Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes
title_full_unstemmed Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes
title_short Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes
title_sort fungal screening on olive oil for extracellular triacylglycerol lipases: selection of a trichoderma harzianum strain and genome wide search for the genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5852558/
https://www.ncbi.nlm.nih.gov/pubmed/29370083
http://dx.doi.org/10.3390/genes9020062
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