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Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency

Root architecture impacts water and nutrient uptake efficiency. Identifying exactly which root architectural properties influence these agronomic traits can prove challenging. In this paper, approximately 300 wheat (Triticum aestivum) plants were divided into four groups using two binary classificat...

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Autores principales: Kenobi, Kim, Atkinson, Jonathan A, Wells, Darren M, Gaju, Oorbessy, De Silva, Jayalath G, Foulkes, M John, Dryden, Ian L, Wood, Andrew T A, Bennett, Malcolm J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853436/
https://www.ncbi.nlm.nih.gov/pubmed/29048563
http://dx.doi.org/10.1093/jxb/erx300
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author Kenobi, Kim
Atkinson, Jonathan A
Wells, Darren M
Gaju, Oorbessy
De Silva, Jayalath G
Foulkes, M John
Dryden, Ian L
Wood, Andrew T A
Bennett, Malcolm J
author_facet Kenobi, Kim
Atkinson, Jonathan A
Wells, Darren M
Gaju, Oorbessy
De Silva, Jayalath G
Foulkes, M John
Dryden, Ian L
Wood, Andrew T A
Bennett, Malcolm J
author_sort Kenobi, Kim
collection PubMed
description Root architecture impacts water and nutrient uptake efficiency. Identifying exactly which root architectural properties influence these agronomic traits can prove challenging. In this paper, approximately 300 wheat (Triticum aestivum) plants were divided into four groups using two binary classifications, high versus low nitrogen uptake efficiency (NUpE), and high versus low nitrate in the growth medium. The root system architecture for each wheat plant was captured using 16 quantitative variables. The multivariate analysis tool, linear discriminant analysis, was used to construct composite variables, each a linear combination of the original variables, such that the score of the plants on the new variables showed the maximum between-group variability. The results show that the distribution of root-system architecture traits differs between low- and high-NUpE plants and, less strongly, between low-NUpE plants grown on low versus high nitrate media.
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spelling pubmed-58534362018-07-25 Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency Kenobi, Kim Atkinson, Jonathan A Wells, Darren M Gaju, Oorbessy De Silva, Jayalath G Foulkes, M John Dryden, Ian L Wood, Andrew T A Bennett, Malcolm J J Exp Bot Research Papers Root architecture impacts water and nutrient uptake efficiency. Identifying exactly which root architectural properties influence these agronomic traits can prove challenging. In this paper, approximately 300 wheat (Triticum aestivum) plants were divided into four groups using two binary classifications, high versus low nitrogen uptake efficiency (NUpE), and high versus low nitrate in the growth medium. The root system architecture for each wheat plant was captured using 16 quantitative variables. The multivariate analysis tool, linear discriminant analysis, was used to construct composite variables, each a linear combination of the original variables, such that the score of the plants on the new variables showed the maximum between-group variability. The results show that the distribution of root-system architecture traits differs between low- and high-NUpE plants and, less strongly, between low-NUpE plants grown on low versus high nitrate media. Oxford University Press 2017-10-13 2017-09-27 /pmc/articles/PMC5853436/ /pubmed/29048563 http://dx.doi.org/10.1093/jxb/erx300 Text en © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Papers
Kenobi, Kim
Atkinson, Jonathan A
Wells, Darren M
Gaju, Oorbessy
De Silva, Jayalath G
Foulkes, M John
Dryden, Ian L
Wood, Andrew T A
Bennett, Malcolm J
Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
title Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
title_full Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
title_fullStr Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
title_full_unstemmed Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
title_short Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
title_sort linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853436/
https://www.ncbi.nlm.nih.gov/pubmed/29048563
http://dx.doi.org/10.1093/jxb/erx300
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