Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3

Thraustochytrids are ecologically and biotechnologically relevant marine species. We report here the de novo assembly and annotation of the whole-genome sequence of a new thraustochytrid strain, CCAP_4062/3. The genome size was estimated at 38.7 Mb with 11,853 predicted coding sequences, and the GC...

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Detalles Bibliográficos
Autores principales: Seddiki, Khawla, Godart, François, Aiese Cigliano, Riccardo, Sanseverino, Walter, Barakat, Mohamed, Ortet, Philippe, Rébeillé, Fabrice, Maréchal, Eric, Cagnac, Olivier, Amato, Alberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Eukaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5854782/
https://www.ncbi.nlm.nih.gov/pubmed/29545303
http://dx.doi.org/10.1128/genomeA.01335-17
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author Seddiki, Khawla
Godart, François
Aiese Cigliano, Riccardo
Sanseverino, Walter
Barakat, Mohamed
Ortet, Philippe
Rébeillé, Fabrice
Maréchal, Eric
Cagnac, Olivier
Amato, Alberto
author_facet Seddiki, Khawla
Godart, François
Aiese Cigliano, Riccardo
Sanseverino, Walter
Barakat, Mohamed
Ortet, Philippe
Rébeillé, Fabrice
Maréchal, Eric
Cagnac, Olivier
Amato, Alberto
author_sort Seddiki, Khawla
collection PubMed
description Thraustochytrids are ecologically and biotechnologically relevant marine species. We report here the de novo assembly and annotation of the whole-genome sequence of a new thraustochytrid strain, CCAP_4062/3. The genome size was estimated at 38.7 Mb with 11,853 predicted coding sequences, and the GC content was scored at 57%.
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spelling pubmed-58547822018-03-24 Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3 Seddiki, Khawla Godart, François Aiese Cigliano, Riccardo Sanseverino, Walter Barakat, Mohamed Ortet, Philippe Rébeillé, Fabrice Maréchal, Eric Cagnac, Olivier Amato, Alberto Genome Announc Eukaryotes Thraustochytrids are ecologically and biotechnologically relevant marine species. We report here the de novo assembly and annotation of the whole-genome sequence of a new thraustochytrid strain, CCAP_4062/3. The genome size was estimated at 38.7 Mb with 11,853 predicted coding sequences, and the GC content was scored at 57%. American Society for Microbiology 2018-03-15 /pmc/articles/PMC5854782/ /pubmed/29545303 http://dx.doi.org/10.1128/genomeA.01335-17 Text en Copyright © 2018 Seddiki et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Eukaryotes
Seddiki, Khawla
Godart, François
Aiese Cigliano, Riccardo
Sanseverino, Walter
Barakat, Mohamed
Ortet, Philippe
Rébeillé, Fabrice
Maréchal, Eric
Cagnac, Olivier
Amato, Alberto
Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3
title Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3
title_full Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3
title_fullStr Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3
title_full_unstemmed Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3
title_short Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3
title_sort sequencing, de novo assembly, and annotation of the complete genome of a new thraustochytrid species, strain ccap_4062/3
topic Eukaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5854782/
https://www.ncbi.nlm.nih.gov/pubmed/29545303
http://dx.doi.org/10.1128/genomeA.01335-17
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