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Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins

Intrinsically disordered proteins (IDPs) are an emerging phenomenon. They may have a high degree of flexibility in their polypeptide chains, which lack a stable 3D structure. Although several biological functions of IDPs have been proposed, their general function is not known. The only finding relat...

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Detalles Bibliográficos
Autores principales: Matsuo, Naoki, Goda, Natsuko, Shimizu, Kana, Fukuchi, Satoshi, Ota, Motonori, Hiroaki, Hidekazu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5855623/
https://www.ncbi.nlm.nih.gov/pubmed/29385704
http://dx.doi.org/10.3390/ijms19020401
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author Matsuo, Naoki
Goda, Natsuko
Shimizu, Kana
Fukuchi, Satoshi
Ota, Motonori
Hiroaki, Hidekazu
author_facet Matsuo, Naoki
Goda, Natsuko
Shimizu, Kana
Fukuchi, Satoshi
Ota, Motonori
Hiroaki, Hidekazu
author_sort Matsuo, Naoki
collection PubMed
description Intrinsically disordered proteins (IDPs) are an emerging phenomenon. They may have a high degree of flexibility in their polypeptide chains, which lack a stable 3D structure. Although several biological functions of IDPs have been proposed, their general function is not known. The only finding related to their function is the genetically conserved YSK(2) motif present in plant dehydrins. These proteins were shown to be IDPs with the YSK(2) motif serving as a core region for the dehydrins’ cryoprotective activity. Here we examined the cryoprotective activity of randomly selected IDPs toward the model enzyme lactate dehydrogenase (LDH). All five IDPs that were examined were in the range of 35–45 amino acid residues in length and were equally potent at a concentration of 50 μg/mL, whereas folded proteins, the PSD-95/Dlg/ZO-1 (PDZ) domain, and lysozymes had no potency. We further examined their cryoprotective activity toward glutathione S-transferase as an example of the other enzyme, and toward enhanced green fluorescent protein as a non-enzyme protein example. We further examined the lyophilization protective activity of the peptides toward LDH, which revealed that some IDPs showed a higher activity than that of bovine serum albumin (BSA). Based on these observations, we propose that cryoprotection is a general feature of IDPs. Our findings may become a clue to various industrial applications of IDPs in the future.
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spelling pubmed-58556232018-03-20 Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins Matsuo, Naoki Goda, Natsuko Shimizu, Kana Fukuchi, Satoshi Ota, Motonori Hiroaki, Hidekazu Int J Mol Sci Article Intrinsically disordered proteins (IDPs) are an emerging phenomenon. They may have a high degree of flexibility in their polypeptide chains, which lack a stable 3D structure. Although several biological functions of IDPs have been proposed, their general function is not known. The only finding related to their function is the genetically conserved YSK(2) motif present in plant dehydrins. These proteins were shown to be IDPs with the YSK(2) motif serving as a core region for the dehydrins’ cryoprotective activity. Here we examined the cryoprotective activity of randomly selected IDPs toward the model enzyme lactate dehydrogenase (LDH). All five IDPs that were examined were in the range of 35–45 amino acid residues in length and were equally potent at a concentration of 50 μg/mL, whereas folded proteins, the PSD-95/Dlg/ZO-1 (PDZ) domain, and lysozymes had no potency. We further examined their cryoprotective activity toward glutathione S-transferase as an example of the other enzyme, and toward enhanced green fluorescent protein as a non-enzyme protein example. We further examined the lyophilization protective activity of the peptides toward LDH, which revealed that some IDPs showed a higher activity than that of bovine serum albumin (BSA). Based on these observations, we propose that cryoprotection is a general feature of IDPs. Our findings may become a clue to various industrial applications of IDPs in the future. MDPI 2018-01-30 /pmc/articles/PMC5855623/ /pubmed/29385704 http://dx.doi.org/10.3390/ijms19020401 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Matsuo, Naoki
Goda, Natsuko
Shimizu, Kana
Fukuchi, Satoshi
Ota, Motonori
Hiroaki, Hidekazu
Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
title Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
title_full Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
title_fullStr Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
title_full_unstemmed Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
title_short Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins
title_sort discovery of cryoprotective activity in human genome-derived intrinsically disordered proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5855623/
https://www.ncbi.nlm.nih.gov/pubmed/29385704
http://dx.doi.org/10.3390/ijms19020401
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