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De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome

Grasshoppers are common pests but also have high nutritional and commercial potential. Xenocatantops brachycerus Willemse (Orthoptera: Acrididae) is an economically important grasshopper species that is reared in China. Using the IlluminaHiSeq(TM) 4000 platform, three transcriptomes of the adult mal...

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Autores principales: Zhao, Le, Zhang, Xinmei, Qiu, Zhongying, Huang, Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5855742/
https://www.ncbi.nlm.nih.gov/pubmed/29419810
http://dx.doi.org/10.3390/ijms19020520
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author Zhao, Le
Zhang, Xinmei
Qiu, Zhongying
Huang, Yuan
author_facet Zhao, Le
Zhang, Xinmei
Qiu, Zhongying
Huang, Yuan
author_sort Zhao, Le
collection PubMed
description Grasshoppers are common pests but also have high nutritional and commercial potential. Xenocatantops brachycerus Willemse (Orthoptera: Acrididae) is an economically important grasshopper species that is reared in China. Using the IlluminaHiSeq(TM) 4000 platform, three transcriptomes of the adult male, adult female, and nymph of X. brachycerus were sequenced. A total of 133,194,848 clean reads were obtained and de novo assembled into 43,187 unigenes with an average length of 964 bp (N50 of 1799 bp); of these, 24,717 (57.23%) unigenes matched known proteins. Based on these annotations, many putative transcripts related to X. brachycerus growth, development, environmental adaptability, and metabolism of nutritional components and bioactive components were identified. In addition, the expression profiles of all three transcriptome datasets were analyzed, and many differentially expressed genes were detected using RSEM and PossionDis. Unigenes. Unigenes with functions associated with growth and development exhibited higher transcript levels at the nymph stage, and unigenes associated with environmental adaptability showed increased transcription in the adults. These comprehensive X. brachycerus transcriptomic data will provide a useful molecular resource for gene prediction, molecular marker development, and studies on signaling pathways in this species and will serve as a reference for the efficient use of other grasshoppers.
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spelling pubmed-58557422018-03-20 De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome Zhao, Le Zhang, Xinmei Qiu, Zhongying Huang, Yuan Int J Mol Sci Article Grasshoppers are common pests but also have high nutritional and commercial potential. Xenocatantops brachycerus Willemse (Orthoptera: Acrididae) is an economically important grasshopper species that is reared in China. Using the IlluminaHiSeq(TM) 4000 platform, three transcriptomes of the adult male, adult female, and nymph of X. brachycerus were sequenced. A total of 133,194,848 clean reads were obtained and de novo assembled into 43,187 unigenes with an average length of 964 bp (N50 of 1799 bp); of these, 24,717 (57.23%) unigenes matched known proteins. Based on these annotations, many putative transcripts related to X. brachycerus growth, development, environmental adaptability, and metabolism of nutritional components and bioactive components were identified. In addition, the expression profiles of all three transcriptome datasets were analyzed, and many differentially expressed genes were detected using RSEM and PossionDis. Unigenes. Unigenes with functions associated with growth and development exhibited higher transcript levels at the nymph stage, and unigenes associated with environmental adaptability showed increased transcription in the adults. These comprehensive X. brachycerus transcriptomic data will provide a useful molecular resource for gene prediction, molecular marker development, and studies on signaling pathways in this species and will serve as a reference for the efficient use of other grasshoppers. MDPI 2018-02-08 /pmc/articles/PMC5855742/ /pubmed/29419810 http://dx.doi.org/10.3390/ijms19020520 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhao, Le
Zhang, Xinmei
Qiu, Zhongying
Huang, Yuan
De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
title De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
title_full De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
title_fullStr De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
title_full_unstemmed De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
title_short De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
title_sort de novo assembly and characterization of the xenocatantops brachycerus transcriptome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5855742/
https://www.ncbi.nlm.nih.gov/pubmed/29419810
http://dx.doi.org/10.3390/ijms19020520
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