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A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species
Mutation rate is usually found to covary with many life history traits of animals such as body mass, which has been readily explained by the higher number of mutation opportunities per unit time. Although the precise reason for the pattern is not yet clear, to determine the universality of this patt...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857172/ https://www.ncbi.nlm.nih.gov/pubmed/29576965 http://dx.doi.org/10.7717/peerj.4495 |
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author | Fan, Haiying Guo, Weibin |
author_facet | Fan, Haiying Guo, Weibin |
author_sort | Fan, Haiying |
collection | PubMed |
description | Mutation rate is usually found to covary with many life history traits of animals such as body mass, which has been readily explained by the higher number of mutation opportunities per unit time. Although the precise reason for the pattern is not yet clear, to determine the universality of this pattern, we tested whether life history traits impact another form of genetic mutation, the motif mismatches in microsatellites. Employing published genome sequences from 65 avian species, we explored the motif mismatches patterns of microsatellites in birds on a genomic level and assessed the relationship between motif mismatches and body mass in a phylogenetic context. We found that small-bodied species have a higher average mismatches and we suggested that higher heterozygosity in imperfect microsatellites lead to the increase of motif mismatches. Our results obtained from this study imply that a negative body mass trend in mutation rate may be a general pattern of avian molecular evolution. |
format | Online Article Text |
id | pubmed-5857172 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58571722018-03-24 A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species Fan, Haiying Guo, Weibin PeerJ Evolutionary Studies Mutation rate is usually found to covary with many life history traits of animals such as body mass, which has been readily explained by the higher number of mutation opportunities per unit time. Although the precise reason for the pattern is not yet clear, to determine the universality of this pattern, we tested whether life history traits impact another form of genetic mutation, the motif mismatches in microsatellites. Employing published genome sequences from 65 avian species, we explored the motif mismatches patterns of microsatellites in birds on a genomic level and assessed the relationship between motif mismatches and body mass in a phylogenetic context. We found that small-bodied species have a higher average mismatches and we suggested that higher heterozygosity in imperfect microsatellites lead to the increase of motif mismatches. Our results obtained from this study imply that a negative body mass trend in mutation rate may be a general pattern of avian molecular evolution. PeerJ Inc. 2018-03-14 /pmc/articles/PMC5857172/ /pubmed/29576965 http://dx.doi.org/10.7717/peerj.4495 Text en ©2018 Fan and Guo http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Evolutionary Studies Fan, Haiying Guo, Weibin A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
title | A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
title_full | A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
title_fullStr | A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
title_full_unstemmed | A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
title_short | A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
title_sort | genome-wide investigation of microsatellite mismatches and the association with body mass among bird species |
topic | Evolutionary Studies |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857172/ https://www.ncbi.nlm.nih.gov/pubmed/29576965 http://dx.doi.org/10.7717/peerj.4495 |
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