Cargando…

Plasmodium parasites of birds have the most AT-rich genes of eukaryotes

The genomic architecture of organisms, including nucleotide composition, can be highly variable, even among closely-related species. To better understand the causes leading to structural variation in genomes, information on distinct and diverse genomic features is needed. Malaria parasites are known...

Descripción completa

Detalles Bibliográficos
Autor principal: Videvall, Elin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857377/
https://www.ncbi.nlm.nih.gov/pubmed/29360019
http://dx.doi.org/10.1099/mgen.0.000150
_version_ 1783307460358963200
author Videvall, Elin
author_facet Videvall, Elin
author_sort Videvall, Elin
collection PubMed
description The genomic architecture of organisms, including nucleotide composition, can be highly variable, even among closely-related species. To better understand the causes leading to structural variation in genomes, information on distinct and diverse genomic features is needed. Malaria parasites are known for encompassing a wide range of genomic GC-content and it has long been thought that Plasmodium falciparum, the virulent malaria parasite of humans, has the most AT-biased eukaryotic genome. Here, I perform comparative genomic analyses of the most AT-rich eukaryotes sequenced to date, and show that the avian malaria parasites Plasmodium gallinaceum, P. ashfordi, and P. relictum have the most extreme coding sequences in terms of AT-bias. Their mean GC-content is 21.21, 21.22 and 21.60 %, respectively, which is considerably lower than the transcriptome of P. falciparum (23.79 %) and other eukaryotes. This information enables a better understanding of genome evolution and raises the question of how certain organisms are able to prosper despite severe compositional constraints.
format Online
Article
Text
id pubmed-5857377
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Microbiology Society
record_format MEDLINE/PubMed
spelling pubmed-58573772018-04-05 Plasmodium parasites of birds have the most AT-rich genes of eukaryotes Videvall, Elin Microb Genom Research Article The genomic architecture of organisms, including nucleotide composition, can be highly variable, even among closely-related species. To better understand the causes leading to structural variation in genomes, information on distinct and diverse genomic features is needed. Malaria parasites are known for encompassing a wide range of genomic GC-content and it has long been thought that Plasmodium falciparum, the virulent malaria parasite of humans, has the most AT-biased eukaryotic genome. Here, I perform comparative genomic analyses of the most AT-rich eukaryotes sequenced to date, and show that the avian malaria parasites Plasmodium gallinaceum, P. ashfordi, and P. relictum have the most extreme coding sequences in terms of AT-bias. Their mean GC-content is 21.21, 21.22 and 21.60 %, respectively, which is considerably lower than the transcriptome of P. falciparum (23.79 %) and other eukaryotes. This information enables a better understanding of genome evolution and raises the question of how certain organisms are able to prosper despite severe compositional constraints. Microbiology Society 2018-01-23 /pmc/articles/PMC5857377/ /pubmed/29360019 http://dx.doi.org/10.1099/mgen.0.000150 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Videvall, Elin
Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
title Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
title_full Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
title_fullStr Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
title_full_unstemmed Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
title_short Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
title_sort plasmodium parasites of birds have the most at-rich genes of eukaryotes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857377/
https://www.ncbi.nlm.nih.gov/pubmed/29360019
http://dx.doi.org/10.1099/mgen.0.000150
work_keys_str_mv AT videvallelin plasmodiumparasitesofbirdshavethemostatrichgenesofeukaryotes