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Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types

The diversity of intrinsic dynamics observed in neurons may enhance the computations implemented in the circuit by enriching network-level emergent properties such as synchronization and phase locking. Large-scale spiking network models of entire brain regions offer a platform to test theories of ne...

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Autores principales: Venkadesh, Siva, Komendantov, Alexander O., Listopad, Stanislav, Scott, Eric O., De Jong, Kenneth, Krichmar, Jeffrey L., Ascoli, Giorgio A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5859109/
https://www.ncbi.nlm.nih.gov/pubmed/29593519
http://dx.doi.org/10.3389/fninf.2018.00008
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author Venkadesh, Siva
Komendantov, Alexander O.
Listopad, Stanislav
Scott, Eric O.
De Jong, Kenneth
Krichmar, Jeffrey L.
Ascoli, Giorgio A.
author_facet Venkadesh, Siva
Komendantov, Alexander O.
Listopad, Stanislav
Scott, Eric O.
De Jong, Kenneth
Krichmar, Jeffrey L.
Ascoli, Giorgio A.
author_sort Venkadesh, Siva
collection PubMed
description The diversity of intrinsic dynamics observed in neurons may enhance the computations implemented in the circuit by enriching network-level emergent properties such as synchronization and phase locking. Large-scale spiking network models of entire brain regions offer a platform to test theories of neural computation and cognitive function, providing useful insights on information processing in the nervous system. However, a systematic in-depth investigation requires network simulations to capture the biological intrinsic diversity of individual neurons at a sufficient level of accuracy. The computationally efficient Izhikevich model can reproduce a wide range of neuronal behaviors qualitatively. Previous studies using optimization techniques, however, were less successful in quantitatively matching experimentally recorded voltage traces. In this article, we present an automated pipeline based on evolutionary algorithms to quantitatively reproduce features of various classes of neuronal spike patterns using the Izhikevich model. Employing experimental data from Hippocampome.org, a comprehensive knowledgebase of neuron types in the rodent hippocampus, we demonstrate that our approach reliably fit Izhikevich models to nine distinct classes of experimentally recorded spike patterns, including delayed spiking, spiking with adaptation, stuttering, and bursting. Importantly, by leveraging the parameter-exploration capabilities of evolutionary algorithms, and by representing qualitative spike pattern class definitions in the error landscape, our approach creates several suitable models for each neuron type, exhibiting appropriate feature variabilities among neurons. Moreover, we demonstrate the flexibility of our methodology by creating multi-compartment Izhikevich models for each neuron type in addition to single-point versions. Although the results presented here focus on hippocampal neuron types, the same strategy is broadly applicable to any neural systems.
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spelling pubmed-58591092018-03-28 Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types Venkadesh, Siva Komendantov, Alexander O. Listopad, Stanislav Scott, Eric O. De Jong, Kenneth Krichmar, Jeffrey L. Ascoli, Giorgio A. Front Neuroinform Neuroscience The diversity of intrinsic dynamics observed in neurons may enhance the computations implemented in the circuit by enriching network-level emergent properties such as synchronization and phase locking. Large-scale spiking network models of entire brain regions offer a platform to test theories of neural computation and cognitive function, providing useful insights on information processing in the nervous system. However, a systematic in-depth investigation requires network simulations to capture the biological intrinsic diversity of individual neurons at a sufficient level of accuracy. The computationally efficient Izhikevich model can reproduce a wide range of neuronal behaviors qualitatively. Previous studies using optimization techniques, however, were less successful in quantitatively matching experimentally recorded voltage traces. In this article, we present an automated pipeline based on evolutionary algorithms to quantitatively reproduce features of various classes of neuronal spike patterns using the Izhikevich model. Employing experimental data from Hippocampome.org, a comprehensive knowledgebase of neuron types in the rodent hippocampus, we demonstrate that our approach reliably fit Izhikevich models to nine distinct classes of experimentally recorded spike patterns, including delayed spiking, spiking with adaptation, stuttering, and bursting. Importantly, by leveraging the parameter-exploration capabilities of evolutionary algorithms, and by representing qualitative spike pattern class definitions in the error landscape, our approach creates several suitable models for each neuron type, exhibiting appropriate feature variabilities among neurons. Moreover, we demonstrate the flexibility of our methodology by creating multi-compartment Izhikevich models for each neuron type in addition to single-point versions. Although the results presented here focus on hippocampal neuron types, the same strategy is broadly applicable to any neural systems. Frontiers Media S.A. 2018-03-13 /pmc/articles/PMC5859109/ /pubmed/29593519 http://dx.doi.org/10.3389/fninf.2018.00008 Text en Copyright © 2018 Venkadesh, Komendantov, Listopad, Scott, De Jong, Krichmar and Ascoli. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Venkadesh, Siva
Komendantov, Alexander O.
Listopad, Stanislav
Scott, Eric O.
De Jong, Kenneth
Krichmar, Jeffrey L.
Ascoli, Giorgio A.
Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types
title Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types
title_full Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types
title_fullStr Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types
title_full_unstemmed Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types
title_short Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types
title_sort evolving simple models of diverse intrinsic dynamics in hippocampal neuron types
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5859109/
https://www.ncbi.nlm.nih.gov/pubmed/29593519
http://dx.doi.org/10.3389/fninf.2018.00008
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