Cargando…
Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models
SUMMARY: Reconstructing and analyzing a large number of genome-scale metabolic models is a fundamental part of the integrated study of microbial communities; however, two of the most widely used frameworks for building and analyzing models use different metabolic network representations. Here we des...
Autores principales: | Mundy, Michael, Mendes-Soares, Helena, Chia, Nicholas |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860119/ https://www.ncbi.nlm.nih.gov/pubmed/28379466 http://dx.doi.org/10.1093/bioinformatics/btx185 |
Ejemplares similares
-
M2R: a Python add-on to cobrapy for modifying human genome-scale metabolic reconstruction using the gut microbiota models
por: Weglarz-Tomczak, Ewelina, et al.
Publicado: (2021) -
Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling
por: Jenior, Matthew L, et al.
Publicado: (2023) -
CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED
por: DeJongh, Matthew, et al.
Publicado: (2012) -
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
por: Seaver, Samuel M D, et al.
Publicado: (2020) -
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
por: Seaver, Samuel M D, et al.
Publicado: (2020)