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Phandango: an interactive viewer for bacterial population genomics

SUMMARY: Fully exploiting the wealth of data in current bacterial population genomics datasets requires synthesizing and integrating different types of analysis across millions of base pairs in hundreds or thousands of isolates. Current approaches often use static representations of phylogenetic, ep...

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Detalles Bibliográficos
Autores principales: Hadfield, James, Croucher, Nicholas J, Goater, Richard J, Abudahab, Khalil, Aanensen, David M, Harris, Simon R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860215/
https://www.ncbi.nlm.nih.gov/pubmed/29028899
http://dx.doi.org/10.1093/bioinformatics/btx610
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author Hadfield, James
Croucher, Nicholas J
Goater, Richard J
Abudahab, Khalil
Aanensen, David M
Harris, Simon R
author_facet Hadfield, James
Croucher, Nicholas J
Goater, Richard J
Abudahab, Khalil
Aanensen, David M
Harris, Simon R
author_sort Hadfield, James
collection PubMed
description SUMMARY: Fully exploiting the wealth of data in current bacterial population genomics datasets requires synthesizing and integrating different types of analysis across millions of base pairs in hundreds or thousands of isolates. Current approaches often use static representations of phylogenetic, epidemiological, statistical and evolutionary analysis results that are difficult to relate to one another. Phandango is an interactive application running in a web browser allowing fast exploration of large-scale population genomics datasets combining the output from multiple genomic analysis methods in an intuitive and interactive manner. AVAILABILITY AND IMPLEMENTATION: Phandango is a web application freely available for use at www.phandango.net and includes a diverse collection of datasets as examples. Source code together with a detailed wiki page is available on GitHub at https://github.com/jameshadfield/phandango.
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spelling pubmed-58602152018-03-21 Phandango: an interactive viewer for bacterial population genomics Hadfield, James Croucher, Nicholas J Goater, Richard J Abudahab, Khalil Aanensen, David M Harris, Simon R Bioinformatics Applications Notes SUMMARY: Fully exploiting the wealth of data in current bacterial population genomics datasets requires synthesizing and integrating different types of analysis across millions of base pairs in hundreds or thousands of isolates. Current approaches often use static representations of phylogenetic, epidemiological, statistical and evolutionary analysis results that are difficult to relate to one another. Phandango is an interactive application running in a web browser allowing fast exploration of large-scale population genomics datasets combining the output from multiple genomic analysis methods in an intuitive and interactive manner. AVAILABILITY AND IMPLEMENTATION: Phandango is a web application freely available for use at www.phandango.net and includes a diverse collection of datasets as examples. Source code together with a detailed wiki page is available on GitHub at https://github.com/jameshadfield/phandango. Oxford University Press 2018-01-15 2017-09-25 /pmc/articles/PMC5860215/ /pubmed/29028899 http://dx.doi.org/10.1093/bioinformatics/btx610 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Hadfield, James
Croucher, Nicholas J
Goater, Richard J
Abudahab, Khalil
Aanensen, David M
Harris, Simon R
Phandango: an interactive viewer for bacterial population genomics
title Phandango: an interactive viewer for bacterial population genomics
title_full Phandango: an interactive viewer for bacterial population genomics
title_fullStr Phandango: an interactive viewer for bacterial population genomics
title_full_unstemmed Phandango: an interactive viewer for bacterial population genomics
title_short Phandango: an interactive viewer for bacterial population genomics
title_sort phandango: an interactive viewer for bacterial population genomics
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860215/
https://www.ncbi.nlm.nih.gov/pubmed/29028899
http://dx.doi.org/10.1093/bioinformatics/btx610
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