PyBEL: a computational framework for Biological Expression Language

SUMMARY: Biological Expression Language (BEL) assembles knowledge networks from biological relations across multiple modes and scales. Here, we present PyBEL; a software package for parsing, validating, converting, storing, querying, and visualizing networks encoded in BEL. AVAILABILITY AND IMPLEMEN...

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Detalles Bibliográficos
Autores principales: Hoyt, Charles Tapley, Konotopez, Andrej, Ebeling, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860616/
https://www.ncbi.nlm.nih.gov/pubmed/29048466
http://dx.doi.org/10.1093/bioinformatics/btx660
Descripción
Sumario:SUMMARY: Biological Expression Language (BEL) assembles knowledge networks from biological relations across multiple modes and scales. Here, we present PyBEL; a software package for parsing, validating, converting, storing, querying, and visualizing networks encoded in BEL. AVAILABILITY AND IMPLEMENTATION: PyBEL is implemented in platform-independent, universal Python code. Its source is distributed under the Apache 2.0 License at https://github.com/pybel. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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