PyBEL: a computational framework for Biological Expression Language

SUMMARY: Biological Expression Language (BEL) assembles knowledge networks from biological relations across multiple modes and scales. Here, we present PyBEL; a software package for parsing, validating, converting, storing, querying, and visualizing networks encoded in BEL. AVAILABILITY AND IMPLEMEN...

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Detalles Bibliográficos
Autores principales: Hoyt, Charles Tapley, Konotopez, Andrej, Ebeling, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860616/
https://www.ncbi.nlm.nih.gov/pubmed/29048466
http://dx.doi.org/10.1093/bioinformatics/btx660
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author Hoyt, Charles Tapley
Konotopez, Andrej
Ebeling, Christian
author_facet Hoyt, Charles Tapley
Konotopez, Andrej
Ebeling, Christian
author_sort Hoyt, Charles Tapley
collection PubMed
description SUMMARY: Biological Expression Language (BEL) assembles knowledge networks from biological relations across multiple modes and scales. Here, we present PyBEL; a software package for parsing, validating, converting, storing, querying, and visualizing networks encoded in BEL. AVAILABILITY AND IMPLEMENTATION: PyBEL is implemented in platform-independent, universal Python code. Its source is distributed under the Apache 2.0 License at https://github.com/pybel. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-58606162018-03-28 PyBEL: a computational framework for Biological Expression Language Hoyt, Charles Tapley Konotopez, Andrej Ebeling, Christian Bioinformatics Applications Notes SUMMARY: Biological Expression Language (BEL) assembles knowledge networks from biological relations across multiple modes and scales. Here, we present PyBEL; a software package for parsing, validating, converting, storing, querying, and visualizing networks encoded in BEL. AVAILABILITY AND IMPLEMENTATION: PyBEL is implemented in platform-independent, universal Python code. Its source is distributed under the Apache 2.0 License at https://github.com/pybel. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2018-02-15 2017-10-18 /pmc/articles/PMC5860616/ /pubmed/29048466 http://dx.doi.org/10.1093/bioinformatics/btx660 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Hoyt, Charles Tapley
Konotopez, Andrej
Ebeling, Christian
PyBEL: a computational framework for Biological Expression Language
title PyBEL: a computational framework for Biological Expression Language
title_full PyBEL: a computational framework for Biological Expression Language
title_fullStr PyBEL: a computational framework for Biological Expression Language
title_full_unstemmed PyBEL: a computational framework for Biological Expression Language
title_short PyBEL: a computational framework for Biological Expression Language
title_sort pybel: a computational framework for biological expression language
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860616/
https://www.ncbi.nlm.nih.gov/pubmed/29048466
http://dx.doi.org/10.1093/bioinformatics/btx660
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AT konotopezandrej pybelacomputationalframeworkforbiologicalexpressionlanguage
AT ebelingchristian pybelacomputationalframeworkforbiologicalexpressionlanguage

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