Cargando…

An Updated Functional Annotation of Protein-Coding Genes in the Cucumber Genome

Background: Although the cucumber reference genome and its annotation were published several years ago, the functional annotation of predicted genes, particularly protein-coding genes, still requires further improvement. In general, accurately determining orthologous relationships between genes allo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Song, Hongtao, Lin, Kui, Hu, Jinglu, Pang, Erli
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2018
Materias:	Plant Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5863696/ https://www.ncbi.nlm.nih.gov/pubmed/29599790 http://dx.doi.org/10.3389/fpls.2018.00325

Ejemplares similares

The comparison of alternative splicing among the multiple tissues in cucumber
por: Sun, Ying, et al.
Publicado: (2018)

RNA-Seq improves annotation of protein-coding genes in the cucumber genome
por: Li, Zhen, et al.
Publicado: (2011)

CuAS: a database of annotated transcripts generated by alternative splicing in cucumbers
por: Sun, Ying, et al.
Publicado: (2020)

Population-specific, recent positive selection signatures in cultivated Cucumis sativus L. (cucumber)
por: Lin, Xinrui, et al.
Publicado: (2022)

Ab Initio Construction and Evolutionary Analysis of Protein-Coding Gene Families with Partially Homologous Relationships: Closely Related Drosophila Genomes as a Case Study
por: Han, Xia, et al.
Publicado: (2020)

Comprehensive analysis of cucumber RAV family genes and functional characterization of CsRAV1 in salt and ABA tolerance in cucumber
por: Li, Jialin, et al.
Publicado: (2023)

Identification of clade-wide putative cis-regulatory elements from conserved non-coding sequences in Cucurbitaceae genomes
por: Song, Hongtao, et al.
Publicado: (2023)

Expression and Functional Analysis of the Propamocarb-Related Gene CsMCF in Cucumber
por: Zhang, Fan, et al.
Publicado: (2019)

Genome-Wide Identification of Two-Component System Genes in Cucurbitaceae Crops and Expression Profiling Analyses in Cucumber
por: He, Yanjun, et al.
Publicado: (2016)

Genome-wide characterization, phylogenetic and expression analysis of ABCG gene subfamily in cucumber (Cucumis sativus L.)
por: Yuan, Qi, et al.
Publicado: (2023)

Comparative Transcriptome Analysis of Hard and Tender Fruit Spines of Cucumber to Identify Genes Involved in the Morphological Development of Fruit Spines
por: Lv, Duo, et al.
Publicado: (2022)

Mitochondrial ferritin is a functional iron-storage protein in cucumber (Cucumis sativus) roots
por: Vigani, Gianpiero, et al.
Publicado: (2013)

Advance in sex differentiation in cucumber
por: Luo, Haiyan, et al.
Publicado: (2023)

Expression of candidate marker genes of sugar starvation is upregulated in growth-suppressed parthenocarpic cucumber fruit. Novel gene markers for sugar starvation in growth-suppressed cucumber fruit
por: Tazuke, Akio, et al.
Publicado: (2023)

The catalase gene family in cucumber: genome-wide identification and organization
por: Hu, Lifang, et al.
Publicado: (2016)

Different evolutionary patterns of SNPs between domains and unassigned regions in human protein-coding sequences
por: Pang, Erli, et al.
Publicado: (2016)

Spatiotemporal Expression and Substrate Specificity Analysis of the Cucumber SWEET Gene Family
por: Li, Yaxin, et al.
Publicado: (2017)

Quantitative Trait Loci Mapping and Candidate Gene Analysis of Low Temperature Tolerance in Cucumber Seedlings
por: Dong, Shaoyun, et al.
Publicado: (2019)

Identification of cucumber S-adenosylmethionine decarboxylase genes and functional analysis of CsSAMDC3 in salt tolerance
por: Zhu, Mengliang, et al.
Publicado: (2023)

Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers
por: Hu, Lifang, et al.
Publicado: (2011)

The MADS-Box Gene CsSHP Participates in Fruit Maturation and Floral Organ Development in Cucumber
por: Cheng, Zhihua, et al.
Publicado: (2020)

Mapping Cucumber Vein Yellowing Virus Resistance in Cucumber (Cucumis sativus L.) by Using BSA-seq Analysis
por: Pujol, Marta, et al.
Publicado: (2019)

Genomic-Assisted Marker Development Suitable for CsCvy-1 Selection in Cucumber Breeding
por: Kahveci, Erdem, et al.
Publicado: (2021)

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of “Unknown Function”
por: Quanbeck, Stephanie M., et al.
Publicado: (2012)

Genome-wide analysis of HSP20 gene family and expression patterns under heat stress in cucumber (Cucumis sativus L.)
por: Huang, Junjun, et al.
Publicado: (2022)

Comparison of Metabolome and Functional Properties of Three Korean Cucumber Cultivars
por: Jo, Hyo Eun, et al.
Publicado: (2022)

Cytological, genetic and transcriptomic characterization of a cucumber albino mutant
por: Yan, Jinqiang, et al.
Publicado: (2022)

Cucumber powdery mildew detection method based on hyperspectra-terahertz
por: Zhang, Xiaodong, et al.
Publicado: (2022)

Responses of differential metabolites and pathways to high temperature in cucumber anther
por: Chen, Lin, et al.
Publicado: (2023)

Identification of an Allelic Variant of the CsOr Gene Controlling Fruit Endocarp Color in Cucumber (Cucumis sativus L.) Using Genotyping-By-Sequencing (GBS) and Whole-Genome Sequencing
por: Kishor, D. S., et al.
Publicado: (2021)

DNA Damage Inducible Protein 1 is Involved in Cold Adaption of Harvested Cucumber Fruit
por: Wang, Bin, et al.
Publicado: (2020)

Mitochondrial genome annotation with MFannot: a critical analysis of gene identification and gene model prediction
por: Lang, B. Franz, et al.
Publicado: (2023)

Genomic Prediction and the Practical Breeding of 12 Quantitative-Inherited Traits in Cucumber (Cucumis sativus L.)
por: Liu, Ce, et al.
Publicado: (2021)

QTL Mapping by SLAF-seq and Expression Analysis of Candidate Genes for Aphid Resistance in Cucumber
por: Liang, Danna, et al.
Publicado: (2016)

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes
por: Leroy, Philippe, et al.
Publicado: (2012)

Functional Identification of Corynespora cassiicola-Responsive miRNAs and Their Targets in Cucumber
por: Wang, Xiangyu, et al.
Publicado: (2019)

Heterotrimeric G-Protein γ Subunit CsGG3.2 Positively Regulates the Expression of CBF Genes and Chilling Tolerance in Cucumber
por: Bai, Longqiang, et al.
Publicado: (2018)

Integrative analysis of different low-light-tolerant cucumber lines in response to low-light stress
por: Li, Dandan, et al.
Publicado: (2023)

Novel Informatic Tools to Support Functional Annotation of the Durum Wheat Genome
por: Fruzangohar, Mario, et al.
Publicado: (2019)

QTL mapping and transcriptomic analysis of fruit length in cucumber
por: Xing, Yanan, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_vcdhnoj96gsk9jdmqnl10p8srg