Cargando…

Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state

Within an isogenic population, even in the same extracellular environment, individual cells can exhibit various phenotypic states. The exact role of stochastic gene-state switching regulating the transition among these phenotypic states in a single cell is not fully understood, especially in the pre...

Descripción completa

Detalles Bibliográficos
Autores principales: Ge, Hao, Wu, Pingping, Qian, Hong, Xie, Xiaoliang Sunney
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5864076/
https://www.ncbi.nlm.nih.gov/pubmed/29529037
http://dx.doi.org/10.1371/journal.pcbi.1006051
_version_ 1783308488874655744
author Ge, Hao
Wu, Pingping
Qian, Hong
Xie, Xiaoliang Sunney
author_facet Ge, Hao
Wu, Pingping
Qian, Hong
Xie, Xiaoliang Sunney
author_sort Ge, Hao
collection PubMed
description Within an isogenic population, even in the same extracellular environment, individual cells can exhibit various phenotypic states. The exact role of stochastic gene-state switching regulating the transition among these phenotypic states in a single cell is not fully understood, especially in the presence of positive feedback. Recent high-precision single-cell measurements showed that, at least in bacteria, switching in gene states is slow relative to the typical rates of active transcription and translation. Hence using the lac operon as an archetype, in such a region of operon-state switching, we present a fluctuating-rate model for this classical gene regulation module, incorporating the more realistic operon-state switching mechanism that was recently elucidated. We found that the positive feedback mechanism induces bistability (referred to as deterministic bistability), and that the parameter range for its occurrence is significantly broadened by stochastic operon-state switching. We further show that in the absence of positive feedback, operon-state switching must be extremely slow to trigger bistability by itself. However, in the presence of positive feedback, which stabilizes the induced state, the relatively slow operon-state switching kinetics within the physiological region are sufficient to stabilize the uninduced state, together generating a broadened parameter region of bistability (referred to as stochastic bistability). We illustrate the opposite phenotype-transition rate dependence upon the operon-state switching rates in the two types of bistability, with the aid of a recently proposed rate formula for fluctuating-rate models. The rate formula also predicts a maximal transition rate in the intermediate region of operon-state switching, which is validated by numerical simulations in our model. Overall, our findings suggest a biological function of transcriptional “variations” among genetically identical cells, for the emergence of bistability and transition between phenotypic states.
format Online
Article
Text
id pubmed-5864076
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-58640762018-03-28 Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state Ge, Hao Wu, Pingping Qian, Hong Xie, Xiaoliang Sunney PLoS Comput Biol Research Article Within an isogenic population, even in the same extracellular environment, individual cells can exhibit various phenotypic states. The exact role of stochastic gene-state switching regulating the transition among these phenotypic states in a single cell is not fully understood, especially in the presence of positive feedback. Recent high-precision single-cell measurements showed that, at least in bacteria, switching in gene states is slow relative to the typical rates of active transcription and translation. Hence using the lac operon as an archetype, in such a region of operon-state switching, we present a fluctuating-rate model for this classical gene regulation module, incorporating the more realistic operon-state switching mechanism that was recently elucidated. We found that the positive feedback mechanism induces bistability (referred to as deterministic bistability), and that the parameter range for its occurrence is significantly broadened by stochastic operon-state switching. We further show that in the absence of positive feedback, operon-state switching must be extremely slow to trigger bistability by itself. However, in the presence of positive feedback, which stabilizes the induced state, the relatively slow operon-state switching kinetics within the physiological region are sufficient to stabilize the uninduced state, together generating a broadened parameter region of bistability (referred to as stochastic bistability). We illustrate the opposite phenotype-transition rate dependence upon the operon-state switching rates in the two types of bistability, with the aid of a recently proposed rate formula for fluctuating-rate models. The rate formula also predicts a maximal transition rate in the intermediate region of operon-state switching, which is validated by numerical simulations in our model. Overall, our findings suggest a biological function of transcriptional “variations” among genetically identical cells, for the emergence of bistability and transition between phenotypic states. Public Library of Science 2018-03-12 /pmc/articles/PMC5864076/ /pubmed/29529037 http://dx.doi.org/10.1371/journal.pcbi.1006051 Text en © 2018 Ge et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ge, Hao
Wu, Pingping
Qian, Hong
Xie, Xiaoliang Sunney
Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
title Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
title_full Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
title_fullStr Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
title_full_unstemmed Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
title_short Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
title_sort relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5864076/
https://www.ncbi.nlm.nih.gov/pubmed/29529037
http://dx.doi.org/10.1371/journal.pcbi.1006051
work_keys_str_mv AT gehao relativelyslowstochasticgenestateswitchinginthepresenceofpositivefeedbacksignificantlybroadenstheregionofbimodalitythroughstabilizingtheuninducedphenotypicstate
AT wupingping relativelyslowstochasticgenestateswitchinginthepresenceofpositivefeedbacksignificantlybroadenstheregionofbimodalitythroughstabilizingtheuninducedphenotypicstate
AT qianhong relativelyslowstochasticgenestateswitchinginthepresenceofpositivefeedbacksignificantlybroadenstheregionofbimodalitythroughstabilizingtheuninducedphenotypicstate
AT xiexiaoliangsunney relativelyslowstochasticgenestateswitchinginthepresenceofpositivefeedbacksignificantlybroadenstheregionofbimodalitythroughstabilizingtheuninducedphenotypicstate