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Conjunction of factors triggering waves of seasonal influenza

Using several longitudinal datasets describing putative factors affecting influenza incidence and clinical data on the disease and health status of over 150 million human subjects observed over a decade, we investigated the source and the mechanistic triggers of influenza epidemics. We conclude that...

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Autores principales: Chattopadhyay, Ishanu, Kiciman, Emre, Elliott, Joshua W, Shaman, Jeffrey L, Rzhetsky, Andrey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5864297/
https://www.ncbi.nlm.nih.gov/pubmed/29485041
http://dx.doi.org/10.7554/eLife.30756
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author Chattopadhyay, Ishanu
Kiciman, Emre
Elliott, Joshua W
Shaman, Jeffrey L
Rzhetsky, Andrey
author_facet Chattopadhyay, Ishanu
Kiciman, Emre
Elliott, Joshua W
Shaman, Jeffrey L
Rzhetsky, Andrey
author_sort Chattopadhyay, Ishanu
collection PubMed
description Using several longitudinal datasets describing putative factors affecting influenza incidence and clinical data on the disease and health status of over 150 million human subjects observed over a decade, we investigated the source and the mechanistic triggers of influenza epidemics. We conclude that the initiation of a pan-continental influenza wave emerges from the simultaneous realization of a complex set of conditions. The strongest predictor groups are as follows, ranked by importance: (1) the host population’s socio- and ethno-demographic properties; (2) weather variables pertaining to specific humidity, temperature, and solar radiation; (3) the virus’ antigenic drift over time; (4) the host population’€™s land-based travel habits, and; (5) recent spatio-temporal dynamics, as reflected in the influenza wave auto-correlation. The models we infer are demonstrably predictive (area under the Receiver Operating Characteristic curve 80%) when tested with out-of-sample data, opening the door to the potential formulation of new population-level intervention and mitigation policies.
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spelling pubmed-58642972018-03-26 Conjunction of factors triggering waves of seasonal influenza Chattopadhyay, Ishanu Kiciman, Emre Elliott, Joshua W Shaman, Jeffrey L Rzhetsky, Andrey eLife Epidemiology and Global Health Using several longitudinal datasets describing putative factors affecting influenza incidence and clinical data on the disease and health status of over 150 million human subjects observed over a decade, we investigated the source and the mechanistic triggers of influenza epidemics. We conclude that the initiation of a pan-continental influenza wave emerges from the simultaneous realization of a complex set of conditions. The strongest predictor groups are as follows, ranked by importance: (1) the host population’s socio- and ethno-demographic properties; (2) weather variables pertaining to specific humidity, temperature, and solar radiation; (3) the virus’ antigenic drift over time; (4) the host population’€™s land-based travel habits, and; (5) recent spatio-temporal dynamics, as reflected in the influenza wave auto-correlation. The models we infer are demonstrably predictive (area under the Receiver Operating Characteristic curve 80%) when tested with out-of-sample data, opening the door to the potential formulation of new population-level intervention and mitigation policies. eLife Sciences Publications, Ltd 2018-02-27 /pmc/articles/PMC5864297/ /pubmed/29485041 http://dx.doi.org/10.7554/eLife.30756 Text en © 2018, Chattopadhyay et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Epidemiology and Global Health
Chattopadhyay, Ishanu
Kiciman, Emre
Elliott, Joshua W
Shaman, Jeffrey L
Rzhetsky, Andrey
Conjunction of factors triggering waves of seasonal influenza
title Conjunction of factors triggering waves of seasonal influenza
title_full Conjunction of factors triggering waves of seasonal influenza
title_fullStr Conjunction of factors triggering waves of seasonal influenza
title_full_unstemmed Conjunction of factors triggering waves of seasonal influenza
title_short Conjunction of factors triggering waves of seasonal influenza
title_sort conjunction of factors triggering waves of seasonal influenza
topic Epidemiology and Global Health
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5864297/
https://www.ncbi.nlm.nih.gov/pubmed/29485041
http://dx.doi.org/10.7554/eLife.30756
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