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A fast and sensitive activity assay for lytic polysaccharide monooxygenase
BACKGROUND: Lytic polysaccharide monooxygenases (LPMO) release a spectrum of cleavage products from their polymeric substrates cellulose, hemicellulose, or chitin. The correct identification and quantitation of these released products is the basis of MS/HPLC-based detection methods for LPMO activity...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5865291/ https://www.ncbi.nlm.nih.gov/pubmed/29588664 http://dx.doi.org/10.1186/s13068-018-1063-6 |
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author | Breslmayr, Erik Hanžek, Marija Hanrahan, Aoife Leitner, Christian Kittl, Roman Šantek, Božidar Oostenbrink, Chris Ludwig, Roland |
author_facet | Breslmayr, Erik Hanžek, Marija Hanrahan, Aoife Leitner, Christian Kittl, Roman Šantek, Božidar Oostenbrink, Chris Ludwig, Roland |
author_sort | Breslmayr, Erik |
collection | PubMed |
description | BACKGROUND: Lytic polysaccharide monooxygenases (LPMO) release a spectrum of cleavage products from their polymeric substrates cellulose, hemicellulose, or chitin. The correct identification and quantitation of these released products is the basis of MS/HPLC-based detection methods for LPMO activity. The duration, effort, and intricate analysis allow only specialized laboratories to measure LPMO activity in day-to-day work. A spectrophotometric assay will simplify the screening for LPMO in culture supernatants, help monitor recombinant LPMO expression and purification, and support enzyme characterization. RESULTS: Based on a newly discovered peroxidase activity of LPMO, we propose a fast, robust, and sensitive spectrophotometric activity assay using 2,6-dimethoxyphenol (2,6-DMP) and H(2)O(2). The fast enzymatic assay (300 s) consists of 1 mM 2,6-DMP as chromogenic substrate, 100 µM H(2)O(2) as cosubstrate, and an adequate activity of LPMO in a suitable buffer. The high molar absorption coefficient of the formed product coerulignone (ε(469) = 53,200 M(−1) cm(−1)) makes the assay sensitive and allows reliable activity measurements of LPMO in concentrations of approx. 0.5–50 mg L(−1). CONCLUSIONS: The activity assay based on 2,6-DMP detects a novel peroxidase activity of LPMO. This activity can be accurately measured and used for enzyme screening, production, and purification, and can also be applied to study binding constants or thermal stability. However, the assay has to be used with care in crude extracts, because other enzymes such as laccase or peroxidase will interfere with the assay. We also want to stress that the peroxidase activity is a homogeneous reaction with soluble substrates and should not be correlated to heterogeneous LPMO activity on polymeric substrates. [Image: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13068-018-1063-6) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5865291 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-58652912018-03-27 A fast and sensitive activity assay for lytic polysaccharide monooxygenase Breslmayr, Erik Hanžek, Marija Hanrahan, Aoife Leitner, Christian Kittl, Roman Šantek, Božidar Oostenbrink, Chris Ludwig, Roland Biotechnol Biofuels Research BACKGROUND: Lytic polysaccharide monooxygenases (LPMO) release a spectrum of cleavage products from their polymeric substrates cellulose, hemicellulose, or chitin. The correct identification and quantitation of these released products is the basis of MS/HPLC-based detection methods for LPMO activity. The duration, effort, and intricate analysis allow only specialized laboratories to measure LPMO activity in day-to-day work. A spectrophotometric assay will simplify the screening for LPMO in culture supernatants, help monitor recombinant LPMO expression and purification, and support enzyme characterization. RESULTS: Based on a newly discovered peroxidase activity of LPMO, we propose a fast, robust, and sensitive spectrophotometric activity assay using 2,6-dimethoxyphenol (2,6-DMP) and H(2)O(2). The fast enzymatic assay (300 s) consists of 1 mM 2,6-DMP as chromogenic substrate, 100 µM H(2)O(2) as cosubstrate, and an adequate activity of LPMO in a suitable buffer. The high molar absorption coefficient of the formed product coerulignone (ε(469) = 53,200 M(−1) cm(−1)) makes the assay sensitive and allows reliable activity measurements of LPMO in concentrations of approx. 0.5–50 mg L(−1). CONCLUSIONS: The activity assay based on 2,6-DMP detects a novel peroxidase activity of LPMO. This activity can be accurately measured and used for enzyme screening, production, and purification, and can also be applied to study binding constants or thermal stability. However, the assay has to be used with care in crude extracts, because other enzymes such as laccase or peroxidase will interfere with the assay. We also want to stress that the peroxidase activity is a homogeneous reaction with soluble substrates and should not be correlated to heterogeneous LPMO activity on polymeric substrates. [Image: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13068-018-1063-6) contains supplementary material, which is available to authorized users. BioMed Central 2018-03-23 /pmc/articles/PMC5865291/ /pubmed/29588664 http://dx.doi.org/10.1186/s13068-018-1063-6 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Breslmayr, Erik Hanžek, Marija Hanrahan, Aoife Leitner, Christian Kittl, Roman Šantek, Božidar Oostenbrink, Chris Ludwig, Roland A fast and sensitive activity assay for lytic polysaccharide monooxygenase |
title | A fast and sensitive activity assay for lytic polysaccharide monooxygenase |
title_full | A fast and sensitive activity assay for lytic polysaccharide monooxygenase |
title_fullStr | A fast and sensitive activity assay for lytic polysaccharide monooxygenase |
title_full_unstemmed | A fast and sensitive activity assay for lytic polysaccharide monooxygenase |
title_short | A fast and sensitive activity assay for lytic polysaccharide monooxygenase |
title_sort | fast and sensitive activity assay for lytic polysaccharide monooxygenase |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5865291/ https://www.ncbi.nlm.nih.gov/pubmed/29588664 http://dx.doi.org/10.1186/s13068-018-1063-6 |
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