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STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully under...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869259/ https://www.ncbi.nlm.nih.gov/pubmed/29616079 http://dx.doi.org/10.3389/fgene.2018.00087 |
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author | Nguyen, Loan T. Reverter, Antonio Cánovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. |
author_facet | Nguyen, Loan T. Reverter, Antonio Cánovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. |
author_sort | Nguyen, Loan T. |
collection | PubMed |
description | The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers. |
format | Online Article Text |
id | pubmed-5869259 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58692592018-04-03 STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers Nguyen, Loan T. Reverter, Antonio Cánovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. Front Genet Genetics The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers. Frontiers Media S.A. 2018-03-20 /pmc/articles/PMC5869259/ /pubmed/29616079 http://dx.doi.org/10.3389/fgene.2018.00087 Text en Copyright © 2018 Nguyen, Reverter, Cánovas, Venus, Anderson, Islas-Trejo, Dias, Crawford, Lehnert, Medrano, Thomas, Moore and Fortes. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Nguyen, Loan T. Reverter, Antonio Cánovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title | STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_full | STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_fullStr | STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_full_unstemmed | STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_short | STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_sort | stat6, pbx2, and pbrm1 emerge as predicted regulators of 452 differentially expressed genes associated with puberty in brahman heifers |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869259/ https://www.ncbi.nlm.nih.gov/pubmed/29616079 http://dx.doi.org/10.3389/fgene.2018.00087 |
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