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10KP: A phylodiverse genome sequencing plan

Understanding plant evolution and diversity in a phylogenomic context is an enormous challenge due, in part, to limited availability of genome-scale data across phylodiverse species. The 10KP (10,000 Plants) Genome Sequencing Project will sequence and characterize representative genomes from every m...

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Autores principales: Cheng, Shifeng, Melkonian, Michael, Smith, Stephen A, Brockington, Samuel, Archibald, John M, Delaux, Pierre-Marc, Li, Fay-Wei, Melkonian, Barbara, Mavrodiev, Evgeny V, Sun, Wenjing, Fu, Yuan, Yang, Huanming, Soltis, Douglas E, Graham, Sean W, Soltis, Pamela S, Liu, Xin, Xu, Xun, Wong, Gane Ka-Shu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869286/
https://www.ncbi.nlm.nih.gov/pubmed/29618049
http://dx.doi.org/10.1093/gigascience/giy013
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author Cheng, Shifeng
Melkonian, Michael
Smith, Stephen A
Brockington, Samuel
Archibald, John M
Delaux, Pierre-Marc
Li, Fay-Wei
Melkonian, Barbara
Mavrodiev, Evgeny V
Sun, Wenjing
Fu, Yuan
Yang, Huanming
Soltis, Douglas E
Graham, Sean W
Soltis, Pamela S
Liu, Xin
Xu, Xun
Wong, Gane Ka-Shu
author_facet Cheng, Shifeng
Melkonian, Michael
Smith, Stephen A
Brockington, Samuel
Archibald, John M
Delaux, Pierre-Marc
Li, Fay-Wei
Melkonian, Barbara
Mavrodiev, Evgeny V
Sun, Wenjing
Fu, Yuan
Yang, Huanming
Soltis, Douglas E
Graham, Sean W
Soltis, Pamela S
Liu, Xin
Xu, Xun
Wong, Gane Ka-Shu
author_sort Cheng, Shifeng
collection PubMed
description Understanding plant evolution and diversity in a phylogenomic context is an enormous challenge due, in part, to limited availability of genome-scale data across phylodiverse species. The 10KP (10,000 Plants) Genome Sequencing Project will sequence and characterize representative genomes from every major clade of embryophytes, green algae, and protists (excluding fungi) within the next 5 years. By implementing and continuously improving leading-edge sequencing technologies and bioinformatics tools, 10KP will catalogue the genome content of plant and protist diversity and make these data freely available as an enduring foundation for future scientific discoveries and applications. 10KP is structured as an international consortium, open to the global community, including botanical gardens, plant research institutes, universities, and private industry. Our immediate goal is to establish a policy framework for this endeavor, the principles of which are outlined here.
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spelling pubmed-58692862018-04-05 10KP: A phylodiverse genome sequencing plan Cheng, Shifeng Melkonian, Michael Smith, Stephen A Brockington, Samuel Archibald, John M Delaux, Pierre-Marc Li, Fay-Wei Melkonian, Barbara Mavrodiev, Evgeny V Sun, Wenjing Fu, Yuan Yang, Huanming Soltis, Douglas E Graham, Sean W Soltis, Pamela S Liu, Xin Xu, Xun Wong, Gane Ka-Shu Gigascience Commentary Understanding plant evolution and diversity in a phylogenomic context is an enormous challenge due, in part, to limited availability of genome-scale data across phylodiverse species. The 10KP (10,000 Plants) Genome Sequencing Project will sequence and characterize representative genomes from every major clade of embryophytes, green algae, and protists (excluding fungi) within the next 5 years. By implementing and continuously improving leading-edge sequencing technologies and bioinformatics tools, 10KP will catalogue the genome content of plant and protist diversity and make these data freely available as an enduring foundation for future scientific discoveries and applications. 10KP is structured as an international consortium, open to the global community, including botanical gardens, plant research institutes, universities, and private industry. Our immediate goal is to establish a policy framework for this endeavor, the principles of which are outlined here. Oxford University Press 2018-02-20 /pmc/articles/PMC5869286/ /pubmed/29618049 http://dx.doi.org/10.1093/gigascience/giy013 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Cheng, Shifeng
Melkonian, Michael
Smith, Stephen A
Brockington, Samuel
Archibald, John M
Delaux, Pierre-Marc
Li, Fay-Wei
Melkonian, Barbara
Mavrodiev, Evgeny V
Sun, Wenjing
Fu, Yuan
Yang, Huanming
Soltis, Douglas E
Graham, Sean W
Soltis, Pamela S
Liu, Xin
Xu, Xun
Wong, Gane Ka-Shu
10KP: A phylodiverse genome sequencing plan
title 10KP: A phylodiverse genome sequencing plan
title_full 10KP: A phylodiverse genome sequencing plan
title_fullStr 10KP: A phylodiverse genome sequencing plan
title_full_unstemmed 10KP: A phylodiverse genome sequencing plan
title_short 10KP: A phylodiverse genome sequencing plan
title_sort 10kp: a phylodiverse genome sequencing plan
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869286/
https://www.ncbi.nlm.nih.gov/pubmed/29618049
http://dx.doi.org/10.1093/gigascience/giy013
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