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A machine‐learning approach for extending classical wildlife resource selection analyses

Resource selection functions (RSFs) are tremendously valuable for ecologists and resource managers because they quantify spatial patterns in resource utilization by wildlife, thereby facilitating identification of critical habitat areas and characterizing specific habitat features that are selected...

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Autores principales: Shoemaker, Kevin T., Heffelfinger, Levi J., Jackson, Nathan J., Blum, Marcus E., Wasley, Tony, Stewart, Kelley M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869366/
https://www.ncbi.nlm.nih.gov/pubmed/29607046
http://dx.doi.org/10.1002/ece3.3936
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author Shoemaker, Kevin T.
Heffelfinger, Levi J.
Jackson, Nathan J.
Blum, Marcus E.
Wasley, Tony
Stewart, Kelley M.
author_facet Shoemaker, Kevin T.
Heffelfinger, Levi J.
Jackson, Nathan J.
Blum, Marcus E.
Wasley, Tony
Stewart, Kelley M.
author_sort Shoemaker, Kevin T.
collection PubMed
description Resource selection functions (RSFs) are tremendously valuable for ecologists and resource managers because they quantify spatial patterns in resource utilization by wildlife, thereby facilitating identification of critical habitat areas and characterizing specific habitat features that are selected or avoided. RSFs discriminate between known‐use resource units (e.g., telemetry locations) and available (or randomly selected) resource units based on an array of environmental features, and in their standard form are performed using logistic regression. As generalized linear models, standard RSFs have some notable limitations, such as difficulties in accommodating nonlinear (e.g., humped or threshold) relationships and complex interactions. Increasingly, ecologists are using flexible machine‐learning methods (e.g., random forests, neural networks) to overcome these limitations. Herein, we investigate the seasonal resource selection patterns of mule deer (Odocoileus hemionus) by comparing a logistic regression framework with random forest (RF), a popular machine‐learning algorithm. Random forest (RF) models detected nonlinear relationships (e.g., optimal ranges for slope and elevation) and complex interactions which would have been very challenging to discover and characterize using standard model‐based approaches. Compared with standard RSF models, RF models exhibited improved predictive skill, provided novel insights about resource selection patterns of mule deer, and, when projected across a relevant geographic space, manifested notable differences in predicted habitat suitability. We recommend that wildlife researchers harness the strengths of machine‐learning tools like RF in addition to “classical” tools (e.g., mixed‐effects logistic regression) for evaluating resource selection, especially in cases where extensive telemetry data sets are available.
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spelling pubmed-58693662018-03-30 A machine‐learning approach for extending classical wildlife resource selection analyses Shoemaker, Kevin T. Heffelfinger, Levi J. Jackson, Nathan J. Blum, Marcus E. Wasley, Tony Stewart, Kelley M. Ecol Evol Original Research Resource selection functions (RSFs) are tremendously valuable for ecologists and resource managers because they quantify spatial patterns in resource utilization by wildlife, thereby facilitating identification of critical habitat areas and characterizing specific habitat features that are selected or avoided. RSFs discriminate between known‐use resource units (e.g., telemetry locations) and available (or randomly selected) resource units based on an array of environmental features, and in their standard form are performed using logistic regression. As generalized linear models, standard RSFs have some notable limitations, such as difficulties in accommodating nonlinear (e.g., humped or threshold) relationships and complex interactions. Increasingly, ecologists are using flexible machine‐learning methods (e.g., random forests, neural networks) to overcome these limitations. Herein, we investigate the seasonal resource selection patterns of mule deer (Odocoileus hemionus) by comparing a logistic regression framework with random forest (RF), a popular machine‐learning algorithm. Random forest (RF) models detected nonlinear relationships (e.g., optimal ranges for slope and elevation) and complex interactions which would have been very challenging to discover and characterize using standard model‐based approaches. Compared with standard RSF models, RF models exhibited improved predictive skill, provided novel insights about resource selection patterns of mule deer, and, when projected across a relevant geographic space, manifested notable differences in predicted habitat suitability. We recommend that wildlife researchers harness the strengths of machine‐learning tools like RF in addition to “classical” tools (e.g., mixed‐effects logistic regression) for evaluating resource selection, especially in cases where extensive telemetry data sets are available. John Wiley and Sons Inc. 2018-02-28 /pmc/articles/PMC5869366/ /pubmed/29607046 http://dx.doi.org/10.1002/ece3.3936 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Shoemaker, Kevin T.
Heffelfinger, Levi J.
Jackson, Nathan J.
Blum, Marcus E.
Wasley, Tony
Stewart, Kelley M.
A machine‐learning approach for extending classical wildlife resource selection analyses
title A machine‐learning approach for extending classical wildlife resource selection analyses
title_full A machine‐learning approach for extending classical wildlife resource selection analyses
title_fullStr A machine‐learning approach for extending classical wildlife resource selection analyses
title_full_unstemmed A machine‐learning approach for extending classical wildlife resource selection analyses
title_short A machine‐learning approach for extending classical wildlife resource selection analyses
title_sort machine‐learning approach for extending classical wildlife resource selection analyses
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869366/
https://www.ncbi.nlm.nih.gov/pubmed/29607046
http://dx.doi.org/10.1002/ece3.3936
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