Fuento: functional enrichment for bioinformatics

SUMMARY: The currently available functional enrichment software focuses mostly on gene expression analysis, whereby server- and graphical-user-interface-based tools with specific scope dominate the field. Here we present an efficient, user-friendly, multifunctional command-line-based functional enri...

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Detalles Bibliográficos
Autores principales: Weichselbaum, David, Zagrovic, Bojan, Polyansky, Anton A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870553/
https://www.ncbi.nlm.nih.gov/pubmed/28379299
http://dx.doi.org/10.1093/bioinformatics/btx179
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author Weichselbaum, David
Zagrovic, Bojan
Polyansky, Anton A
author_facet Weichselbaum, David
Zagrovic, Bojan
Polyansky, Anton A
author_sort Weichselbaum, David
collection PubMed
description SUMMARY: The currently available functional enrichment software focuses mostly on gene expression analysis, whereby server- and graphical-user-interface-based tools with specific scope dominate the field. Here we present an efficient, user-friendly, multifunctional command-line-based functional enrichment tool (fu-en-to), tailored for the bioinformatics researcher. AVAILABILITY AND IMPLEMENTATION: Source code and binaries freely available for download at github.com/DavidWeichselbaum/fuento, implemented in C ++ and supported on Linux and OS X.
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spelling pubmed-58705532018-04-05 Fuento: functional enrichment for bioinformatics Weichselbaum, David Zagrovic, Bojan Polyansky, Anton A Bioinformatics Applications Notes SUMMARY: The currently available functional enrichment software focuses mostly on gene expression analysis, whereby server- and graphical-user-interface-based tools with specific scope dominate the field. Here we present an efficient, user-friendly, multifunctional command-line-based functional enrichment tool (fu-en-to), tailored for the bioinformatics researcher. AVAILABILITY AND IMPLEMENTATION: Source code and binaries freely available for download at github.com/DavidWeichselbaum/fuento, implemented in C ++ and supported on Linux and OS X. Oxford University Press 2017-08-15 2017-03-30 /pmc/articles/PMC5870553/ /pubmed/28379299 http://dx.doi.org/10.1093/bioinformatics/btx179 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Weichselbaum, David
Zagrovic, Bojan
Polyansky, Anton A
Fuento: functional enrichment for bioinformatics
title Fuento: functional enrichment for bioinformatics
title_full Fuento: functional enrichment for bioinformatics
title_fullStr Fuento: functional enrichment for bioinformatics
title_full_unstemmed Fuento: functional enrichment for bioinformatics
title_short Fuento: functional enrichment for bioinformatics
title_sort fuento: functional enrichment for bioinformatics
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870553/
https://www.ncbi.nlm.nih.gov/pubmed/28379299
http://dx.doi.org/10.1093/bioinformatics/btx179
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AT zagrovicbojan fuentofunctionalenrichmentforbioinformatics
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