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3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures
MOTIVATION: Complementing structural information with biochemical and biomedical annotations is a powerful approach to explore the biological function of macromolecular complexes. However, currently the compilation of annotations and structural data is a feature only available for those structures t...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870569/ https://www.ncbi.nlm.nih.gov/pubmed/28961691 http://dx.doi.org/10.1093/bioinformatics/btx483 |
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author | Segura, Joan Sanchez-Garcia, Ruben Martinez, Marta Cuenca-Alba, Jesus Tabas-Madrid, Daniel Sorzano, C O S Carazo, J M |
author_facet | Segura, Joan Sanchez-Garcia, Ruben Martinez, Marta Cuenca-Alba, Jesus Tabas-Madrid, Daniel Sorzano, C O S Carazo, J M |
author_sort | Segura, Joan |
collection | PubMed |
description | MOTIVATION: Complementing structural information with biochemical and biomedical annotations is a powerful approach to explore the biological function of macromolecular complexes. However, currently the compilation of annotations and structural data is a feature only available for those structures that have been released as entries to the Protein Data Bank. RESULTS: To help researchers in assessing the consistency between structures and biological annotations for structural models not deposited in databases, we present 3DBIONOTES v2.0, a web application designed for the automatic annotation of biochemical and biomedical information onto macromolecular structural models determined by any experimental or computational technique. AVAILABILITY AND IMPLEMENTATION: The web server is available at http://3dbionotes-ws.cnb.csic.es. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-5870569 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-58705692018-04-05 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures Segura, Joan Sanchez-Garcia, Ruben Martinez, Marta Cuenca-Alba, Jesus Tabas-Madrid, Daniel Sorzano, C O S Carazo, J M Bioinformatics Applications Notes MOTIVATION: Complementing structural information with biochemical and biomedical annotations is a powerful approach to explore the biological function of macromolecular complexes. However, currently the compilation of annotations and structural data is a feature only available for those structures that have been released as entries to the Protein Data Bank. RESULTS: To help researchers in assessing the consistency between structures and biological annotations for structural models not deposited in databases, we present 3DBIONOTES v2.0, a web application designed for the automatic annotation of biochemical and biomedical information onto macromolecular structural models determined by any experimental or computational technique. AVAILABILITY AND IMPLEMENTATION: The web server is available at http://3dbionotes-ws.cnb.csic.es. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2017-11-15 2017-07-28 /pmc/articles/PMC5870569/ /pubmed/28961691 http://dx.doi.org/10.1093/bioinformatics/btx483 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Segura, Joan Sanchez-Garcia, Ruben Martinez, Marta Cuenca-Alba, Jesus Tabas-Madrid, Daniel Sorzano, C O S Carazo, J M 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures |
title | 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures |
title_full | 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures |
title_fullStr | 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures |
title_full_unstemmed | 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures |
title_short | 3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures |
title_sort | 3dbionotes v2.0: a web server for the automatic annotation of macromolecular structures |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870569/ https://www.ncbi.nlm.nih.gov/pubmed/28961691 http://dx.doi.org/10.1093/bioinformatics/btx483 |
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