SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy

SUMMARY: SMLocalizer combines the availability of ImageJ with the power of GPU processing for fast and accurate analysis of single molecule localization microscopy data. Analysis of 2D and 3D data in multiple channels is supported. AVAILABILITY AND IMPLEMENTATION: Plugin freely available for Fiji an...

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Detalles Bibliográficos
Autores principales: Bernhem, Kristoffer, Brismar, Hjalmar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870682/
https://www.ncbi.nlm.nih.gov/pubmed/28968783
http://dx.doi.org/10.1093/bioinformatics/btx553
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author Bernhem, Kristoffer
Brismar, Hjalmar
author_facet Bernhem, Kristoffer
Brismar, Hjalmar
author_sort Bernhem, Kristoffer
collection PubMed
description SUMMARY: SMLocalizer combines the availability of ImageJ with the power of GPU processing for fast and accurate analysis of single molecule localization microscopy data. Analysis of 2D and 3D data in multiple channels is supported. AVAILABILITY AND IMPLEMENTATION: Plugin freely available for Fiji and ImageJ2.0 through https://sourceforge.net/projects/smlocalizer/. Plugin also available for continuous updates through ImageJ update system, add http://sites.imagej.net/Cellular-Biophysics-KTH/ as update site in ImageJ. Java and CUDA source code freely available on the web at https://github.com/KristofferBernhem/SMlocalizer. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-58706822018-04-05 SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy Bernhem, Kristoffer Brismar, Hjalmar Bioinformatics Applications Notes SUMMARY: SMLocalizer combines the availability of ImageJ with the power of GPU processing for fast and accurate analysis of single molecule localization microscopy data. Analysis of 2D and 3D data in multiple channels is supported. AVAILABILITY AND IMPLEMENTATION: Plugin freely available for Fiji and ImageJ2.0 through https://sourceforge.net/projects/smlocalizer/. Plugin also available for continuous updates through ImageJ update system, add http://sites.imagej.net/Cellular-Biophysics-KTH/ as update site in ImageJ. Java and CUDA source code freely available on the web at https://github.com/KristofferBernhem/SMlocalizer. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2018-01-01 2017-09-04 /pmc/articles/PMC5870682/ /pubmed/28968783 http://dx.doi.org/10.1093/bioinformatics/btx553 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Bernhem, Kristoffer
Brismar, Hjalmar
SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy
title SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy
title_full SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy
title_fullStr SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy
title_full_unstemmed SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy
title_short SMLocalizer, a GPU accelerated ImageJ plugin for single molecule localization microscopy
title_sort smlocalizer, a gpu accelerated imagej plugin for single molecule localization microscopy
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870682/
https://www.ncbi.nlm.nih.gov/pubmed/28968783
http://dx.doi.org/10.1093/bioinformatics/btx553
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