MISA-web: a web server for microsatellite prediction

MOTIVATION: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. RESULTS: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemente...

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Autores principales: Beier, Sebastian, Thiel, Thomas, Münch, Thomas, Scholz, Uwe, Mascher, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870701/
https://www.ncbi.nlm.nih.gov/pubmed/28398459
http://dx.doi.org/10.1093/bioinformatics/btx198
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author Beier, Sebastian
Thiel, Thomas
Münch, Thomas
Scholz, Uwe
Mascher, Martin
author_facet Beier, Sebastian
Thiel, Thomas
Münch, Thomas
Scholz, Uwe
Mascher, Martin
author_sort Beier, Sebastian
collection PubMed
description MOTIVATION: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. RESULTS: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. AVAILABILITY AND IMPLEMENTATION: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code.
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spelling pubmed-58707012018-04-05 MISA-web: a web server for microsatellite prediction Beier, Sebastian Thiel, Thomas Münch, Thomas Scholz, Uwe Mascher, Martin Bioinformatics Applications Notes MOTIVATION: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. RESULTS: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. AVAILABILITY AND IMPLEMENTATION: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code. Oxford University Press 2017-08-15 2017-04-07 /pmc/articles/PMC5870701/ /pubmed/28398459 http://dx.doi.org/10.1093/bioinformatics/btx198 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Beier, Sebastian
Thiel, Thomas
Münch, Thomas
Scholz, Uwe
Mascher, Martin
MISA-web: a web server for microsatellite prediction
title MISA-web: a web server for microsatellite prediction
title_full MISA-web: a web server for microsatellite prediction
title_fullStr MISA-web: a web server for microsatellite prediction
title_full_unstemmed MISA-web: a web server for microsatellite prediction
title_short MISA-web: a web server for microsatellite prediction
title_sort misa-web: a web server for microsatellite prediction
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870701/
https://www.ncbi.nlm.nih.gov/pubmed/28398459
http://dx.doi.org/10.1093/bioinformatics/btx198
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AT munchthomas misawebawebserverformicrosatelliteprediction
AT scholzuwe misawebawebserverformicrosatelliteprediction
AT maschermartin misawebawebserverformicrosatelliteprediction

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