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UpSetR: an R package for the visualization of intersecting sets and their properties

MOTIVATION: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. RESULTS: We developed UpSetR, an open source R package th...

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Detalles Bibliográficos
Autores principales: Conway, Jake R, Lex, Alexander, Gehlenborg, Nils
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870712/
https://www.ncbi.nlm.nih.gov/pubmed/28645171
http://dx.doi.org/10.1093/bioinformatics/btx364
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author Conway, Jake R
Lex, Alexander
Gehlenborg, Nils
author_facet Conway, Jake R
Lex, Alexander
Gehlenborg, Nils
author_sort Conway, Jake R
collection PubMed
description MOTIVATION: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. RESULTS: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties. AVAILABILITY AND IMPLEMENTATION: UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-58707122018-04-05 UpSetR: an R package for the visualization of intersecting sets and their properties Conway, Jake R Lex, Alexander Gehlenborg, Nils Bioinformatics Applications Notes MOTIVATION: Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed. RESULTS: We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties. AVAILABILITY AND IMPLEMENTATION: UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2017-09-15 2017-06-22 /pmc/articles/PMC5870712/ /pubmed/28645171 http://dx.doi.org/10.1093/bioinformatics/btx364 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Conway, Jake R
Lex, Alexander
Gehlenborg, Nils
UpSetR: an R package for the visualization of intersecting sets and their properties
title UpSetR: an R package for the visualization of intersecting sets and their properties
title_full UpSetR: an R package for the visualization of intersecting sets and their properties
title_fullStr UpSetR: an R package for the visualization of intersecting sets and their properties
title_full_unstemmed UpSetR: an R package for the visualization of intersecting sets and their properties
title_short UpSetR: an R package for the visualization of intersecting sets and their properties
title_sort upsetr: an r package for the visualization of intersecting sets and their properties
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870712/
https://www.ncbi.nlm.nih.gov/pubmed/28645171
http://dx.doi.org/10.1093/bioinformatics/btx364
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