ResistoMap—online visualization of human gut microbiota antibiotic resistome

We created ResistoMap—a Web-based interactive visualization of the presence of genetic determinants conferring resistance to antibiotics, biocides and heavy metals in human gut microbiota. ResistoMap displays the data on more than 1500 published gut metagenomes of world populations including both he...

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Detalles Bibliográficos
Autores principales: Yarygin, Konstantin S, Kovarsky, Boris A, Bibikova, Tatyana S, Melnikov, Damir S, Tyakht, Alexander V, Alexeev, Dmitry G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870722/
https://www.ncbi.nlm.nih.gov/pubmed/28334267
http://dx.doi.org/10.1093/bioinformatics/btx134
Descripción
Sumario:We created ResistoMap—a Web-based interactive visualization of the presence of genetic determinants conferring resistance to antibiotics, biocides and heavy metals in human gut microbiota. ResistoMap displays the data on more than 1500 published gut metagenomes of world populations including both healthy subjects and patients. Multiparameter display filters allow visual assessment of the associations between the meta-data and proportions of resistome. The geographic map navigation layer allows to state hypotheses regarding the global trends of antibiotic resistance and correlates the gut resistome variations with the national clinical guidelines on antibiotics application. AVAILABILITY AND IMPLEMENTATION: ResistoMap was implemented using AngularJS, CoffeeScript, D3.js and TopoJSON. The tool is publicly available at http://resistomap.rcpcm.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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