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Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment

MOTIVATION: The concept of a ‘mechanism-based taxonomy of human disease’ is currently replacing the outdated paradigm of diseases classified by clinical appearance. We have tackled the paradigm of mechanism-based patient subgroup identification in the challenging area of research on neurodegenerativ...

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Autores principales: Domingo-Fernández, Daniel, Kodamullil, Alpha Tom, Iyappan, Anandhi, Naz, Mufassra, Emon, Mohammad Asif, Raschka, Tamara, Karki, Reagon, Springstubbe, Stephan, Ebeling, Christian, Hofmann-Apitius, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870765/
https://www.ncbi.nlm.nih.gov/pubmed/28651363
http://dx.doi.org/10.1093/bioinformatics/btx399
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author Domingo-Fernández, Daniel
Kodamullil, Alpha Tom
Iyappan, Anandhi
Naz, Mufassra
Emon, Mohammad Asif
Raschka, Tamara
Karki, Reagon
Springstubbe, Stephan
Ebeling, Christian
Hofmann-Apitius, Martin
author_facet Domingo-Fernández, Daniel
Kodamullil, Alpha Tom
Iyappan, Anandhi
Naz, Mufassra
Emon, Mohammad Asif
Raschka, Tamara
Karki, Reagon
Springstubbe, Stephan
Ebeling, Christian
Hofmann-Apitius, Martin
author_sort Domingo-Fernández, Daniel
collection PubMed
description MOTIVATION: The concept of a ‘mechanism-based taxonomy of human disease’ is currently replacing the outdated paradigm of diseases classified by clinical appearance. We have tackled the paradigm of mechanism-based patient subgroup identification in the challenging area of research on neurodegenerative diseases. RESULTS: We have developed a knowledge base representing essential pathophysiology mechanisms of neurodegenerative diseases. Together with dedicated algorithms, this knowledge base forms the basis for a ‘mechanism-enrichment server’ that supports the mechanistic interpretation of multiscale, multimodal clinical data. AVAILABILITY AND IMPLEMENTATION: NeuroMMSig is available at http://neurommsig.scai.fraunhofer.de/ SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-58707652018-03-29 Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment Domingo-Fernández, Daniel Kodamullil, Alpha Tom Iyappan, Anandhi Naz, Mufassra Emon, Mohammad Asif Raschka, Tamara Karki, Reagon Springstubbe, Stephan Ebeling, Christian Hofmann-Apitius, Martin Bioinformatics Applications Notes MOTIVATION: The concept of a ‘mechanism-based taxonomy of human disease’ is currently replacing the outdated paradigm of diseases classified by clinical appearance. We have tackled the paradigm of mechanism-based patient subgroup identification in the challenging area of research on neurodegenerative diseases. RESULTS: We have developed a knowledge base representing essential pathophysiology mechanisms of neurodegenerative diseases. Together with dedicated algorithms, this knowledge base forms the basis for a ‘mechanism-enrichment server’ that supports the mechanistic interpretation of multiscale, multimodal clinical data. AVAILABILITY AND IMPLEMENTATION: NeuroMMSig is available at http://neurommsig.scai.fraunhofer.de/ SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2017-11-15 2017-06-23 /pmc/articles/PMC5870765/ /pubmed/28651363 http://dx.doi.org/10.1093/bioinformatics/btx399 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Domingo-Fernández, Daniel
Kodamullil, Alpha Tom
Iyappan, Anandhi
Naz, Mufassra
Emon, Mohammad Asif
Raschka, Tamara
Karki, Reagon
Springstubbe, Stephan
Ebeling, Christian
Hofmann-Apitius, Martin
Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
title Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
title_full Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
title_fullStr Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
title_full_unstemmed Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
title_short Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
title_sort multimodal mechanistic signatures for neurodegenerative diseases (neurommsig): a web server for mechanism enrichment
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870765/
https://www.ncbi.nlm.nih.gov/pubmed/28651363
http://dx.doi.org/10.1093/bioinformatics/btx399
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