Irys Extract

SUMMARY: Irys Extract is a software tool for generating genomic information from data collected by the BioNano Genomics Irys platform. The tool allows the user easy access to the raw data in the form of cropped images and genetically aligned intensity profiles. The latter are also made compatible wi...

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Detalles Bibliográficos
Autores principales: Arielly, Rani, Ebenstein, Yuval
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870776/
https://www.ncbi.nlm.nih.gov/pubmed/29036307
http://dx.doi.org/10.1093/bioinformatics/btx437
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author Arielly, Rani
Ebenstein, Yuval
author_facet Arielly, Rani
Ebenstein, Yuval
author_sort Arielly, Rani
collection PubMed
description SUMMARY: Irys Extract is a software tool for generating genomic information from data collected by the BioNano Genomics Irys platform. The tool allows the user easy access to the raw data in the form of cropped images and genetically aligned intensity profiles. The latter are also made compatible with the BED format for using with popular genomic browsers such as the UCSC Genome Browser. AVAILABILITY AND IMPLEMENTATION: Irys Extract has been developed in Matlab R2015a, it was tested to work with IrysView 2.4.0.15879 and AutoDetect 2.1.4.9159, and it currently runs under Microsoft Windows operating systems (7-10). Irys Extract can be downloaded alongside its manual and a demo dataset at http://www.nanobiophotonix.com and https://sites.google.com/site/raniarielly/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-58707762018-03-29 Irys Extract Arielly, Rani Ebenstein, Yuval Bioinformatics Applications Notes SUMMARY: Irys Extract is a software tool for generating genomic information from data collected by the BioNano Genomics Irys platform. The tool allows the user easy access to the raw data in the form of cropped images and genetically aligned intensity profiles. The latter are also made compatible with the BED format for using with popular genomic browsers such as the UCSC Genome Browser. AVAILABILITY AND IMPLEMENTATION: Irys Extract has been developed in Matlab R2015a, it was tested to work with IrysView 2.4.0.15879 and AutoDetect 2.1.4.9159, and it currently runs under Microsoft Windows operating systems (7-10). Irys Extract can be downloaded alongside its manual and a demo dataset at http://www.nanobiophotonix.com and https://sites.google.com/site/raniarielly/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2018-01-01 2017-07-11 /pmc/articles/PMC5870776/ /pubmed/29036307 http://dx.doi.org/10.1093/bioinformatics/btx437 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Arielly, Rani
Ebenstein, Yuval
Irys Extract
title Irys Extract
title_full Irys Extract
title_fullStr Irys Extract
title_full_unstemmed Irys Extract
title_short Irys Extract
title_sort irys extract
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870776/
https://www.ncbi.nlm.nih.gov/pubmed/29036307
http://dx.doi.org/10.1093/bioinformatics/btx437
work_keys_str_mv AT ariellyrani irysextract
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