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O(2) evolution and recovery of the water-oxidizing enzyme
In photosystem II, light-induced water oxidation occurs at the Mn(4)CaO(5) cluster. Here we demonstrate proton releases, dioxygen formation, and substrate water incorporation in response to Mn(4)CaO(5) oxidation in the protein environment, using a quantum mechanical/molecular mechanical approach and...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871790/ https://www.ncbi.nlm.nih.gov/pubmed/29593210 http://dx.doi.org/10.1038/s41467-018-03545-w |
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author | Kawashima, Keisuke Takaoka, Tomohiro Kimura, Hiroki Saito, Keisuke Ishikita, Hiroshi |
author_facet | Kawashima, Keisuke Takaoka, Tomohiro Kimura, Hiroki Saito, Keisuke Ishikita, Hiroshi |
author_sort | Kawashima, Keisuke |
collection | PubMed |
description | In photosystem II, light-induced water oxidation occurs at the Mn(4)CaO(5) cluster. Here we demonstrate proton releases, dioxygen formation, and substrate water incorporation in response to Mn(4)CaO(5) oxidation in the protein environment, using a quantum mechanical/molecular mechanical approach and molecular dynamics simulations. In S(2), H(2)O at the W1 site forms a low-barrier H-bond with D1-Asp61. In the S(2)-to-S(3) transition, oxidation of O(W1)H(–) to O(W1)(•–), concerted proton transfer from O(W1)H(–) to D1-Asp61, and binding of a water molecule W(n-W1) at O(W1)(•–) are observed. In S(4), W(n)(-W1) facilitates oxo-oxyl radical coupling between O(W1)(•–) and corner μ-oxo O4. Deprotonation via D1-Asp61 leads to formation of O(W1)=O4. As O(W1)=O4 moves away from Mn, H(2)O at W539 is incorporated into the vacant O4 site of the O(2)-evolved Mn(4)CaO(4) cluster, forming a μ-oxo bridge (Mn3–O(W539)–Mn4) in an exergonic process. Simultaneously, W(n-W1) is incorporated as W1, recovering the Mn(4)CaO(5) cluster. |
format | Online Article Text |
id | pubmed-5871790 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58717902018-03-29 O(2) evolution and recovery of the water-oxidizing enzyme Kawashima, Keisuke Takaoka, Tomohiro Kimura, Hiroki Saito, Keisuke Ishikita, Hiroshi Nat Commun Article In photosystem II, light-induced water oxidation occurs at the Mn(4)CaO(5) cluster. Here we demonstrate proton releases, dioxygen formation, and substrate water incorporation in response to Mn(4)CaO(5) oxidation in the protein environment, using a quantum mechanical/molecular mechanical approach and molecular dynamics simulations. In S(2), H(2)O at the W1 site forms a low-barrier H-bond with D1-Asp61. In the S(2)-to-S(3) transition, oxidation of O(W1)H(–) to O(W1)(•–), concerted proton transfer from O(W1)H(–) to D1-Asp61, and binding of a water molecule W(n-W1) at O(W1)(•–) are observed. In S(4), W(n)(-W1) facilitates oxo-oxyl radical coupling between O(W1)(•–) and corner μ-oxo O4. Deprotonation via D1-Asp61 leads to formation of O(W1)=O4. As O(W1)=O4 moves away from Mn, H(2)O at W539 is incorporated into the vacant O4 site of the O(2)-evolved Mn(4)CaO(4) cluster, forming a μ-oxo bridge (Mn3–O(W539)–Mn4) in an exergonic process. Simultaneously, W(n-W1) is incorporated as W1, recovering the Mn(4)CaO(5) cluster. Nature Publishing Group UK 2018-03-28 /pmc/articles/PMC5871790/ /pubmed/29593210 http://dx.doi.org/10.1038/s41467-018-03545-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kawashima, Keisuke Takaoka, Tomohiro Kimura, Hiroki Saito, Keisuke Ishikita, Hiroshi O(2) evolution and recovery of the water-oxidizing enzyme |
title | O(2) evolution and recovery of the water-oxidizing enzyme |
title_full | O(2) evolution and recovery of the water-oxidizing enzyme |
title_fullStr | O(2) evolution and recovery of the water-oxidizing enzyme |
title_full_unstemmed | O(2) evolution and recovery of the water-oxidizing enzyme |
title_short | O(2) evolution and recovery of the water-oxidizing enzyme |
title_sort | o(2) evolution and recovery of the water-oxidizing enzyme |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871790/ https://www.ncbi.nlm.nih.gov/pubmed/29593210 http://dx.doi.org/10.1038/s41467-018-03545-w |
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