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A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
Idiopathic dilated cardiomyopathy (IDC) is the most common form of non-ischemic chronic heart failure. Despite the higher prevalence of IDC in African Americans, the genetics of IDC have been relatively understudied in this ethnic group. We performed a genome-wide association study to identify susce...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872085/ https://www.ncbi.nlm.nih.gov/pubmed/29495422 http://dx.doi.org/10.3390/jpm8010011 |
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author | Xu, Huichun Dorn II, Gerald W. Shetty, Amol Parihar, Ankita Dave, Tushar Robinson, Shawn W. Gottlieb, Stephen S. Donahue, Mark P. Tomaselli, Gordon F. Kraus, William E. Mitchell, Braxton D. Liggett, Stephen B. |
author_facet | Xu, Huichun Dorn II, Gerald W. Shetty, Amol Parihar, Ankita Dave, Tushar Robinson, Shawn W. Gottlieb, Stephen S. Donahue, Mark P. Tomaselli, Gordon F. Kraus, William E. Mitchell, Braxton D. Liggett, Stephen B. |
author_sort | Xu, Huichun |
collection | PubMed |
description | Idiopathic dilated cardiomyopathy (IDC) is the most common form of non-ischemic chronic heart failure. Despite the higher prevalence of IDC in African Americans, the genetics of IDC have been relatively understudied in this ethnic group. We performed a genome-wide association study to identify susceptibility genes for IDC in African Americans recruited from five sites in the U.S. (662 unrelated cases and 1167 controls). The heritability of IDC was calculated to be 33% (95% confidence interval: 19–47%; p = 6.4 × 10(−7)). We detected association of a variant in a novel intronic locus in the CACNB4 gene meeting genome-wide levels of significance (p = 4.1 × 10(−8)). The CACNB4 gene encodes a calcium channel subunit expressed in the heart that is important for cardiac muscle contraction. This variant has not previously been associated with IDC in any racial group. Pathway analysis, based on the 1000 genes most strongly associated with IDC, showed an enrichment for genes related to calcium signaling, growth factor signaling, neuronal/neuromuscular signaling, and various types of cellular level signaling, including gap junction and cAMP signaling. Our results suggest a novel locus for IDC in African Americans and provide additional insights into the genetic architecture and etiology. |
format | Online Article Text |
id | pubmed-5872085 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-58720852018-03-30 A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans Xu, Huichun Dorn II, Gerald W. Shetty, Amol Parihar, Ankita Dave, Tushar Robinson, Shawn W. Gottlieb, Stephen S. Donahue, Mark P. Tomaselli, Gordon F. Kraus, William E. Mitchell, Braxton D. Liggett, Stephen B. J Pers Med Article Idiopathic dilated cardiomyopathy (IDC) is the most common form of non-ischemic chronic heart failure. Despite the higher prevalence of IDC in African Americans, the genetics of IDC have been relatively understudied in this ethnic group. We performed a genome-wide association study to identify susceptibility genes for IDC in African Americans recruited from five sites in the U.S. (662 unrelated cases and 1167 controls). The heritability of IDC was calculated to be 33% (95% confidence interval: 19–47%; p = 6.4 × 10(−7)). We detected association of a variant in a novel intronic locus in the CACNB4 gene meeting genome-wide levels of significance (p = 4.1 × 10(−8)). The CACNB4 gene encodes a calcium channel subunit expressed in the heart that is important for cardiac muscle contraction. This variant has not previously been associated with IDC in any racial group. Pathway analysis, based on the 1000 genes most strongly associated with IDC, showed an enrichment for genes related to calcium signaling, growth factor signaling, neuronal/neuromuscular signaling, and various types of cellular level signaling, including gap junction and cAMP signaling. Our results suggest a novel locus for IDC in African Americans and provide additional insights into the genetic architecture and etiology. MDPI 2018-02-26 /pmc/articles/PMC5872085/ /pubmed/29495422 http://dx.doi.org/10.3390/jpm8010011 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xu, Huichun Dorn II, Gerald W. Shetty, Amol Parihar, Ankita Dave, Tushar Robinson, Shawn W. Gottlieb, Stephen S. Donahue, Mark P. Tomaselli, Gordon F. Kraus, William E. Mitchell, Braxton D. Liggett, Stephen B. A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans |
title | A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans |
title_full | A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans |
title_fullStr | A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans |
title_full_unstemmed | A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans |
title_short | A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans |
title_sort | genome-wide association study of idiopathic dilated cardiomyopathy in african americans |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872085/ https://www.ncbi.nlm.nih.gov/pubmed/29495422 http://dx.doi.org/10.3390/jpm8010011 |
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