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A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans

Idiopathic dilated cardiomyopathy (IDC) is the most common form of non-ischemic chronic heart failure. Despite the higher prevalence of IDC in African Americans, the genetics of IDC have been relatively understudied in this ethnic group. We performed a genome-wide association study to identify susce...

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Autores principales: Xu, Huichun, Dorn II, Gerald W., Shetty, Amol, Parihar, Ankita, Dave, Tushar, Robinson, Shawn W., Gottlieb, Stephen S., Donahue, Mark P., Tomaselli, Gordon F., Kraus, William E., Mitchell, Braxton D., Liggett, Stephen B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872085/
https://www.ncbi.nlm.nih.gov/pubmed/29495422
http://dx.doi.org/10.3390/jpm8010011
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author Xu, Huichun
Dorn II, Gerald W.
Shetty, Amol
Parihar, Ankita
Dave, Tushar
Robinson, Shawn W.
Gottlieb, Stephen S.
Donahue, Mark P.
Tomaselli, Gordon F.
Kraus, William E.
Mitchell, Braxton D.
Liggett, Stephen B.
author_facet Xu, Huichun
Dorn II, Gerald W.
Shetty, Amol
Parihar, Ankita
Dave, Tushar
Robinson, Shawn W.
Gottlieb, Stephen S.
Donahue, Mark P.
Tomaselli, Gordon F.
Kraus, William E.
Mitchell, Braxton D.
Liggett, Stephen B.
author_sort Xu, Huichun
collection PubMed
description Idiopathic dilated cardiomyopathy (IDC) is the most common form of non-ischemic chronic heart failure. Despite the higher prevalence of IDC in African Americans, the genetics of IDC have been relatively understudied in this ethnic group. We performed a genome-wide association study to identify susceptibility genes for IDC in African Americans recruited from five sites in the U.S. (662 unrelated cases and 1167 controls). The heritability of IDC was calculated to be 33% (95% confidence interval: 19–47%; p = 6.4 × 10(−7)). We detected association of a variant in a novel intronic locus in the CACNB4 gene meeting genome-wide levels of significance (p = 4.1 × 10(−8)). The CACNB4 gene encodes a calcium channel subunit expressed in the heart that is important for cardiac muscle contraction. This variant has not previously been associated with IDC in any racial group. Pathway analysis, based on the 1000 genes most strongly associated with IDC, showed an enrichment for genes related to calcium signaling, growth factor signaling, neuronal/neuromuscular signaling, and various types of cellular level signaling, including gap junction and cAMP signaling. Our results suggest a novel locus for IDC in African Americans and provide additional insights into the genetic architecture and etiology.
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spelling pubmed-58720852018-03-30 A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans Xu, Huichun Dorn II, Gerald W. Shetty, Amol Parihar, Ankita Dave, Tushar Robinson, Shawn W. Gottlieb, Stephen S. Donahue, Mark P. Tomaselli, Gordon F. Kraus, William E. Mitchell, Braxton D. Liggett, Stephen B. J Pers Med Article Idiopathic dilated cardiomyopathy (IDC) is the most common form of non-ischemic chronic heart failure. Despite the higher prevalence of IDC in African Americans, the genetics of IDC have been relatively understudied in this ethnic group. We performed a genome-wide association study to identify susceptibility genes for IDC in African Americans recruited from five sites in the U.S. (662 unrelated cases and 1167 controls). The heritability of IDC was calculated to be 33% (95% confidence interval: 19–47%; p = 6.4 × 10(−7)). We detected association of a variant in a novel intronic locus in the CACNB4 gene meeting genome-wide levels of significance (p = 4.1 × 10(−8)). The CACNB4 gene encodes a calcium channel subunit expressed in the heart that is important for cardiac muscle contraction. This variant has not previously been associated with IDC in any racial group. Pathway analysis, based on the 1000 genes most strongly associated with IDC, showed an enrichment for genes related to calcium signaling, growth factor signaling, neuronal/neuromuscular signaling, and various types of cellular level signaling, including gap junction and cAMP signaling. Our results suggest a novel locus for IDC in African Americans and provide additional insights into the genetic architecture and etiology. MDPI 2018-02-26 /pmc/articles/PMC5872085/ /pubmed/29495422 http://dx.doi.org/10.3390/jpm8010011 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xu, Huichun
Dorn II, Gerald W.
Shetty, Amol
Parihar, Ankita
Dave, Tushar
Robinson, Shawn W.
Gottlieb, Stephen S.
Donahue, Mark P.
Tomaselli, Gordon F.
Kraus, William E.
Mitchell, Braxton D.
Liggett, Stephen B.
A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
title A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
title_full A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
title_fullStr A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
title_full_unstemmed A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
title_short A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
title_sort genome-wide association study of idiopathic dilated cardiomyopathy in african americans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872085/
https://www.ncbi.nlm.nih.gov/pubmed/29495422
http://dx.doi.org/10.3390/jpm8010011
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